PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02707.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 197aa MW: 19920.8 Da PI: 5.5658 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 50.9 | 6.1e-16 | 4 | 52 | 37 | 88 |
TCP 37 deLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +eLG+++d++t++WLlqqa+pai ++tgt++++as+ +s+ s +++++ Zmw_sc02707.1.g00130.1.am.mkhc 4 KELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASAL---ASVPSLPSPNAA 52 59*******************************9665...444444433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 12.453 | 1 | 29 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.2E-12 | 5 | 171 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDPKELGHKS DGETVQWLLQ QAEPAIVAAT GTGTIPASAL ASVPSLPSPN AALARPHHHH 60 MWAPPAASAG FSSAGFLNSA AGGADAAGIG GLMQRMGLPA GLDMSGGGAA GGHIGFAPMF 120 AGHAAAGVPG LELGLSQDGH IGVLAPQSLS QFYHHVGAAG GSGQLQHPHQ RHQHQHQQQE 180 DGEDEREDAE SDEESGQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456872.1 | 7e-73 | transcription factor TCP20 | ||||
TrEMBL | A0A0A8YXQ0 | 8e-79 | A0A0A8YXQ0_ARUDO; Uncharacterized protein | ||||
STRING | Sb03g044320.1 | 3e-72 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |