PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02706.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 324aa    MW: 34135.6 Da    PI: 5.3876
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02706.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY795.4e-25115176159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg+ WrKYGqKe+++s +prsY+rCt++   gC +k++v+ +++dp+ +++tY geH+++
  Zmw_sc02706.1.g00070.1.sm.mkhc 115 LDDGHIWRKYGQKEIQNSLHPRSYFRCTHKsdqGCDAKRHVQLCETDPSKFVVTYYGEHTCR 176
                                     58***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26112178IPR003657WRKY domain
SuperFamilySSF1182902.35E-24114178IPR003657WRKY domain
SMARTSM007741.0E-35115177IPR003657WRKY domain
PROSITE profilePS5081122.917115178IPR003657WRKY domain
PfamPF031061.2E-24116176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAWSGGDVPA ERATAAASDL VEAREGVERL KTFLLQLGDR RAPWAEEVAD GVLNCLNRLA  60
NATSALDVVA GGERPRAGSV GGRPQPPASS SRNTRNCSVP RRSQRALDQR ITASLDDGHI  120
WRKYGQKEIQ NSLHPRSYFR CTHKSDQGCD AKRHVQLCET DPSKFVVTYY GEHTCRDPAT  180
IPLVIHATAG AAPDGGGASN LISFAPSRAN AGSTSGASST QVLEMDGGAA TQLSTSWCTS  240
DDLFSSSAGS FMEVEYGLEA VVGSAAGVMS ARTVAGSAQD YSDIMHGRPP GARGVGVAGN  300
FPSSPNSLGF EVADDDDDFF RLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-28111176469OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984468.11e-115probable WRKY transcription factor 70 isoform X2
TrEMBLK4ACH41e-113K4ACH4_SETIT; Uncharacterized protein
STRINGSi036565m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526