PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02681.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 304aa MW: 33440.4 Da PI: 10.0244 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4e-15 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky Zmw_sc02681.1.g00040.1.sm.mkhc 144 PWTQEEHRKFLDGLRQLGKGDWRGISKNFITTRTATQVASHAQKY 188 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.432 | 137 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-17 | 138 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-18 | 140 | 192 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 141 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-11 | 141 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-12 | 144 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.67E-10 | 144 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MIPSPTRIPQ SSLQSIRPNQ PSNPLPTRLP STATAQQTPG EGMEPRRLDE EQEGRKQAAP 60 VSFRLFGMDV RVAGEDGVDV EEDDGGPMEI KKSSSMPNLT SINPLRPLPG EEVGKGYASD 120 DGDLASPQQK RRRRKTQERK KGVPWTQEEH RKFLDGLRQL GKGDWRGISK NFITTRTATQ 180 VASHAQKYFL RQTNPGKKKR RASLFDVGMS DYNNDQVPSS QSIATQPAPT EEIIHTDRGD 240 VPVNEPTNFF KRSKAHAETS FASMASGRET ASSSISSLEL NIAVNSLDLS IAPPRGTPEA 300 IKVL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | KRRRRK |
2 | 129 | 140 | KRRRRKTQERKK |
3 | 130 | 140 | RRRRKTQERKK |
4 | 196 | 200 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983632.1 | 1e-110 | transcription factor MYBS2 | ||||
Swissprot | B8BI93 | 6e-82 | MYBS2_ORYSI; Transcription factor MYBS2 | ||||
Swissprot | Q7XC51 | 6e-82 | MYBS2_ORYSJ; Transcription factor MYBS2 | ||||
TrEMBL | A0A0A9KKT0 | 1e-125 | A0A0A9KKT0_ARUDO; Uncharacterized protein | ||||
STRING | Si036966m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10464 | 30 | 43 |
Publications ? help Back to Top | |||
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