PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02676.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 310aa    MW: 33709.1 Da    PI: 7.0395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02676.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd +lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zmw_sc02676.1.g00020.1.sm.mk 14 KGPWTPEEDIILVSYVQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding47.54e-1567112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
  Zmw_sc02676.1.g00020.1.sm.mk  67 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.638965IPR017930Myb domain
SuperFamilySSF466891.46E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002493.0E-161461IPR001005SANT/Myb domain
CDDcd001675.31E-121661No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129418.7466116IPR017930Myb domain
SMARTSM007175.4E-1366114IPR001005SANT/Myb domain
PfamPF002495.4E-1367112IPR001005SANT/Myb domain
CDDcd001675.32E-969110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYVQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY  60
LRPGIRRGNF TPHEEGIIVH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKHQ  120
AIGAIFAPPP SDLSSSTVPT LTGAGHGGHP VITSPLSKDN YAPHTACSNP GDDVTQLISR  180
RSPFAAAGSL DAESSSSSSY ASSMDNISKL LDGFMKSTTP QNDAADIKPS SNPLLSFEQG  240
SGGSALPNFA DVLLPQPVLM EERSHHEQPK QQQEQAPLSS IEKWLLDEAA EQVGGLMDLS  300
DGCCSVPMLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827828.11e-141transcription factor MYB30-like
SwissprotB3VTV71e-92MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A3L6P9F71e-147A0A3L6P9F7_PANMI; Transcription factor MYB30-like
STRINGSi026651m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]