PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02666.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 478aa    MW: 53197.7 Da    PI: 10.3272
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02666.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27174224151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien++nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s
  Zmw_sc02666.1.g00180.1.am.mk 174 KRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 224
                                   79***********************************************96 PP
2K-box67.83.7e-23236328192
                         K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                                   yq++++++  e ++ ++   e++++k+e+++L+  +R++ G+dL+sL+l + + LeqqLe s++k+R++K+ell +q+++l
  Zmw_sc02666.1.g00180.1.am.mk 236 YQHTTNNHfEEINHDQQIFVEMTRMKEEVDKLEMGIRRYAGDDLSSLTLSDVKDLEQQLEFSVNKVRARKHELLSQQLDNL 316
                                   56666777777788899999************************************************************* PP

                         K-box  81 qkkekelqeenk 92 
                                   ++k +e+q++n 
  Zmw_sc02666.1.g00180.1.am.mk 317 RRKINENQQQNL 328
                                   *********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-41166225IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282166226IPR002100Transcription factor, MADS-box
CDDcd002657.80E-42167243No hitNo description
SuperFamilySSF554551.44E-32167254IPR002100Transcription factor, MADS-box
PROSITE patternPS003500168222IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28168188IPR002100Transcription factor, MADS-box
PfamPF003193.4E-25175222IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28188203IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28203224IPR002100Transcription factor, MADS-box
PfamPF014868.8E-20246327IPR002487Transcription factor, K-box
PROSITE profilePS5129712.498250343IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MILEKIKALP NFIVGKSISC SLKQAGFCRP TPPPRPCENR VRQAVPIKPG KQATQPSHRD  60
SMRSLGFLPA SVTIGGKRPR LLLLVAPAEI GKAERPGGAT RVEGMKITSY PALCTPLPAL  120
LYMSLLLPLL PQPFKQAPHK AASSRKSGGR NQFVDLPAKR RSLAAMGRGK IEIKRIENST  180
NRQVTFSKRR GGLLKKANEL AVLCDARVGV VIFSSTGKMF EYCSPTCSLK ELIEQYQHTT  240
NNHFEEINHD QQIFVEMTRM KEEVDKLEMG IRRYAGDDLS SLTLSDVKDL EQQLEFSVNK  300
VRARKHELLS QQLDNLRRKI NENQQQNLAV GRGDMKLAAE MSPLAMLPPP AVAFGHDAAA  360
YYGGESSSSS TALQLMSAAP QLHHPGGGEG FRLQPTQPNL QDLHHGHHGL QLCTVIFRPS  420
HCMFPIHPPG GLGRFYLSPT RGPNNVLRHH LWQQQKLQCC QGHGWALFIY FFKLRLEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18166262192MEF2C
5f28_B2e-18166262192MEF2C
5f28_C2e-18166262192MEF2C
5f28_D2e-18166262192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393162.11e-129MADS-box protein ZMM17 isoform X2
SwissprotQ8VWM81e-129M17_MAIZE; MADS-box protein ZMM17
TrEMBLB4FPJ31e-127B4FPJ3_MAIZE; Uncharacterized protein
TrEMBLB6TVD91e-127B6TVD9_MAIZE; MADS-box transcription factor 29
TrEMBLC5XW431e-127C5XW43_SORBI; Uncharacterized protein
STRINGSb04g004736.11e-128(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100