PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02642.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29172.3 Da PI: 6.4261 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38 | 3.8e-12 | 4 | 40 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 rg W + Ede+l+++v+++G+++W++Ia++++ gR++ Zmw_sc02642.1.g00090.1.am.mk 4 RGHWRPSEDEKLKELVALYGPHNWNAIAEKLQ-GRSAQ 40 899*****************************.**986 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+ell+ ++ +G++ W+ Iar ++ gRt++ +k++w+ Zmw_sc02642.1.g00090.1.am.mk 77 RSPFSEEEEELLLASHRVHGNR-WAVIARLFP-GRTDNAVKNHWHV 120 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.216 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-7 | 3 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-11 | 4 | 40 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.12E-22 | 4 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-24 | 5 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.85E-10 | 7 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.464 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-14 | 77 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 79 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.54E-6 | 92 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCTRGHWRPS EDEKLKELVA LYGPHNWNAI AEKLQGRSAQ AMESYHGVIN KELIEEFVSG 60 KSCRLRWFNQ LDPRINRSPF SEEEEELLLA SHRVHGNRWA VIARLFPGRT DNAVKNHWHV 120 IMARRCRERT RMANKRCGTA AGSAIENDSN PRSAKKDRPD VANSMASLLD KYRSEVTGPF 180 AIGHDSMEGY RSTTNEDMTT DKSVEFYDFL QVNANSSDTK WGSSIEEQDE NRADDDQAEG 240 GQVPFIDFLK VGASHGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 2 | 126 | 5 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644561.1 | 1e-121 | transcription factor MYB52 isoform X3 | ||||
Swissprot | Q6R0C4 | 3e-72 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A060D7S3 | 1e-120 | A0A060D7S3_MAIZE; MYB transcription factor (Fragment) | ||||
STRING | GRMZM2G455869_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Publications ? help Back to Top | |||
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