PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02622.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 330aa    MW: 35515.8 Da    PI: 7.0742
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02622.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.22.8e-31213268156
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                   k r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+ Lt+++vkSHLQkYRl+
  Zmw_sc02622.1.g00050.1.am.mk 213 KSRRCWSPELHRQFVAALNQLGGPQVATPKQIRELMKVDELTNDEVKSHLQKYRLH 268
                                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.255210270IPR017930Myb domain
SuperFamilySSF466899.32E-17211271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28211271IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-26213268IPR006447Myb domain, plants
PfamPF002493.0E-6215266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGLDVGEIGM GADLSLDLRH FASKAMKQTR SALASDMDAY IRRLEEERGK IEVFRRELPI  60
CARLLADVID VMKEEAEKEK KDDRDEEEEE DGATGDKSKW MSTAQLWTSG SGRDAAEPEK  120
QESDKGRSSS EQNSSGGAFT LFNAVGAGMP DLSLLSPPPI TSVPAAAAVE SRRQVVGLAH  180
AAARAASVGG PALCLQPHAQ RTTPPPQQQQ ARKSRRCWSP ELHRQFVAAL NQLGGPQVAT  240
PKQIRELMKV DELTNDEVKS HLQKYRLHTR RTPSGPAVVS QPIVLVGGLW IPHQEHSHSG  300
SHAQSSGSPQ GPLRFSPASG VAVSSAATAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459272.21e-127transcription factor HHO2
TrEMBLA0A0A9H2111e-126A0A0A9H211_ARUDO; Uncharacterized protein
TrEMBLC5X8091e-126C5X809_SORBI; Uncharacterized protein
STRINGSb02g001600.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107