PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02617.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 301aa MW: 32599 Da PI: 11.4382 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63 | 3.4e-20 | 179 | 213 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Zmw_sc02617.1.g00130.1.am.mk 179 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 213 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.167 | 173 | 209 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.3E-19 | 173 | 225 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-14 | 176 | 214 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.4E-17 | 177 | 213 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.22E-13 | 178 | 210 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 179 | 204 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.5E-18 | 179 | 213 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MHKLAQLLRS PVDTAPTRQL EIAVARTSTG PSVRAEEWPF PRTDSCPDIY RDSLLQLQVG 60 SGVAGYPCPS CRQLVLLPSP VVAAQDAAGA GPVRVRYALR RRRLRRTVRW RRGVRVPILA 120 AVSRGGGRAV RLRRRRGWRA VHRRRARGLH AVSRXGGGGA VTSCKEESGS GRGLPSRRCA 180 NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAVA PATRDAGLGS YACGAAYARQ 240 HQQQPPPPQW GCYGSPAGAT SACYGYGDTA GADGPCLSWM LNVMPSSPAF AVQERTLFQY 300 Y |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |