PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02616.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 482aa MW: 54463.6 Da PI: 10.9527 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 239 | 282 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr T++E+ ++++++q+G++ W++Iar+++ gRt++++k++w++ Zmw_sc02616.1.g00060.1.am.mk 239 RGRITADEERVILELHAQWGSR-WSRIARCLP-GRTDNEIKNFWRT 282 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.758 | 157 | 233 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0026 | 161 | 235 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-12 | 163 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.82E-19 | 219 | 288 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.877 | 234 | 288 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-13 | 238 | 286 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 239 | 282 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 241 | 287 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.00E-10 | 243 | 282 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MPMINHRYCP TREKEFLNPT SPPESRPRCR CRCSLSNLER SRRRSHSCLY PRKLQNFAIP 60 PPRLHELSVP LHFPRRGGRE GKEAGNGAQA RRAGAEDPGR QIPLSRQRRK RRRRTSAASF 120 SRIQGNHRLV IMKDVTIKEQ IGGATVARTS TMVMPPASAT RKGPWTEDED AQLVRFVRLF 180 ARWRVRRRPG RRHPVHALRA VVDDACMVID RARSTGSLKR TGKSCRLRWV NYLHPGLRRG 240 RITADEERVI LELHAQWGSR WSRIARCLPG RTDNEIKNFW RTRTRKKALE QRRNTSNGNT 300 ATASSLSSSS SAISFGSPPN RGWSSSPLAT ESPPQGRSSR DDEAELEEAS TTTAASQPQH 360 QQQPLEQKHC YTMDDQLWNE MEAASAGYVA DSCGGAGHDH GGAVVAVGTP PSMPSPVWEF 420 CSDYCSLWRI DDEEYYKMRL DSPHPTFSLI SLLACRIVYL WHPSSGHATT KARTTVVKAI 480 DH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-17 | 162 | 287 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-17 | 162 | 287 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 108 | RQIPLSRQRR |
2 | 106 | 112 | QRRKRRR |
3 | 107 | 113 | RRKRRRR |
4 | 108 | 112 | RKRRR |
5 | 108 | 114 | RKRRRRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680579.1 | 3e-82 | LOW QUALITY PROTEIN: transcription factor MYB59 | ||||
TrEMBL | K3ZD38 | 4e-80 | K3ZD38_SETIT; Uncharacterized protein | ||||
STRING | Si024470m | 7e-81 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |