PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02616.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 482aa    MW: 54463.6 Da    PI: 10.9527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02616.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-15239282146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rgr T++E+  ++++++q+G++ W++Iar+++ gRt++++k++w++
  Zmw_sc02616.1.g00060.1.am.mk 239 RGRITADEERVILELHAQWGSR-WSRIARCLP-GRTDNEIKNFWRT 282
                                   899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.758157233IPR017877Myb-like domain
SMARTSM007170.0026161235IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-12163240IPR009057Homeodomain-like
SuperFamilySSF466893.82E-19219288IPR009057Homeodomain-like
PROSITE profilePS5129420.877234288IPR017930Myb domain
SMARTSM007175.1E-13238286IPR001005SANT/Myb domain
PfamPF002491.9E-12239282IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21241287IPR009057Homeodomain-like
CDDcd001672.00E-10243282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MPMINHRYCP TREKEFLNPT SPPESRPRCR CRCSLSNLER SRRRSHSCLY PRKLQNFAIP  60
PPRLHELSVP LHFPRRGGRE GKEAGNGAQA RRAGAEDPGR QIPLSRQRRK RRRRTSAASF  120
SRIQGNHRLV IMKDVTIKEQ IGGATVARTS TMVMPPASAT RKGPWTEDED AQLVRFVRLF  180
ARWRVRRRPG RRHPVHALRA VVDDACMVID RARSTGSLKR TGKSCRLRWV NYLHPGLRRG  240
RITADEERVI LELHAQWGSR WSRIARCLPG RTDNEIKNFW RTRTRKKALE QRRNTSNGNT  300
ATASSLSSSS SAISFGSPPN RGWSSSPLAT ESPPQGRSSR DDEAELEEAS TTTAASQPQH  360
QQQPLEQKHC YTMDDQLWNE MEAASAGYVA DSCGGAGHDH GGAVVAVGTP PSMPSPVWEF  420
CSDYCSLWRI DDEEYYKMRL DSPHPTFSLI SLLACRIVYL WHPSSGHATT KARTTVVKAI  480
DH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-171622874104C-Myb DNA-Binding Domain
1msf_C2e-171622874104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199108RQIPLSRQRR
2106112QRRKRRR
3107113RRKRRRR
4108112RKRRR
5108114RKRRRRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.13e-82LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLK3ZD384e-80K3ZD38_SETIT; Uncharacterized protein
STRINGSi024470m7e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169