PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02616.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 434aa    MW: 47825.7 Da    PI: 8.2095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02616.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07156187132
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                                   +g+WT+eEd +lv  v+++G ++W+  a+  g
  Zmw_sc02616.1.g00040.1.am.mk 156 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSG 187
                                   79***********************9999877 PP
2Myb_DNA-binding45.71.5e-14239282146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rgr T+ E+ l++++++++G++ W++Iar ++ gRt++++k++w++
  Zmw_sc02616.1.g00040.1.am.mk 239 RGRITANEERLILELHAKWGSR-WSRIARSLP-GRTDNEIKNFWRT 282
                                   8999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.28151233IPR017877Myb-like domain
SuperFamilySSF466892.3E-6153185IPR009057Homeodomain-like
SMARTSM007171.4E-9155235IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-18157188IPR009057Homeodomain-like
CDDcd001679.55E-7158233No hitNo description
SuperFamilySSF466895.43E-19219288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-18220240IPR009057Homeodomain-like
PROSITE profilePS5129421.378234288IPR017930Myb domain
SMARTSM007173.4E-12238286IPR001005SANT/Myb domain
PfamPF002499.0E-13239282IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-21241286IPR009057Homeodomain-like
CDDcd001678.87E-10243282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVISRQDKAA KLDDYPSKWV YRPIQHGAVL TAQARVECLS IYPATSNQEE IDVKMERRSH  60
LPLSSSSRSL VKLGLCLCPG PNQRQQPLKP GQVVIDRSVV VIQGRSGSEE KMDQSIASAA  120
MCSSNKNNSK KQQGGGEQQK SGGSSTTASM AAAMRKGPWT EEEDAQLVWF VRLFGERRWD  180
FLAKVSGLRG GGCIPMHASG GPVGCVHEDF RNGRERCLKR TGKSCRLRWV NYLHPGLRRG  240
RITANEERLI LELHAKWGSR WSRIARSLPG RTDNEIKNFW RTRTRKQKAL GERPQCKDDD  300
KSMTMTASPS SSTVTSAFFS GGGAATSSST VTESALQGSS GGDDEAELDE ASTTTTATAT  360
QHQQPHQQEC YTMDQLLLWN EMAAASYSMD SWGIGHAAAP AEPASMPSPL WELCVDNSLW  420
MIDDEEYYKT LDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-211562874104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-211562874104C-Myb DNA-Binding Domain
1msf_C2e-211562874104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.12e-93LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLA0A3L6T1D11e-87A0A3L6T1D1_PANMI; Uncharacterized protein
STRINGSi024470m8e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169