PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02614.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 1094aa MW: 118838 Da PI: 11.0339

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02614.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.3	1.3e-23	487	531	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ + +k+CErH+hrgr+rsrk++e+ Zmw_sc02614.1.g00020.1.am.mk 487 DPEPGRCRRTDGKKWRCSKEAAPQSKYCERHMHRGRNRSRKPVET 531 79****************************************997 PP
2	QLQ	54.1	4.7e-19	408	443	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ ++L++Q+l+yKyLaa++ vPp+L+++i++ Zmw_sc02614.1.g00020.1.am.mk 408 PFTPAQYEELEQQALIYKYLAAGVAVPPDLVVPIRR 443 8*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.0E-10	407	443	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.4E-13	408	442	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.979	408	443	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.711	487	531	IPR014977	WRC domain
Pfam	PF08879	8.9E-20	488	530	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 1094 aa Download sequence Send to blast
MPPPAPSRAP AILQSPTWPM NGKRLAFTST SLAAQARRST VPSSSQQLDA ARIRKGARWA 60 LRGRTGGGMH AMHAGMPQVC HGRPGGGRRA EPPTEPFTRE HCQLPRACTE DIWVTPGKAG 120 SIRRSPSAMH ARTHGTTHPG GKELVVADRY GVMDATACRL SRATAVRRRF TLHSVWAAYM 180 STPPALVLRR TTATRETQGV PCLTGVRVAR MPTRAGSSCR SQPRRTRFVS PASPPRRTQA 240 TQPPIPTRQI RFIHPNPNPG KRDASRTATQ RETTRAIKAA ARARAKQRRE KGQHQASSPR 300 EGEQAAREKD KKGDGDAVCL SFPGRRRRPP LFHRHRLAPP LLPLLPALLS VRNDGSLLCS 360 PLSSPSCSRA LFLGTDVVAS VCCCRGNGGS GGVGEDAQLS GRWTRPLPFT PAQYEELEQQ 420 ALIYKYLAAG VAVPPDLVVP IRRGLDSLAT RFYGHPTRTA SSSSSYLLVL STPSCLSYGS 480 YFGKKLDPEP GRCRRTDGKK WRCSKEAAPQ SKYCERHMHR GRNRSRKPVE TQLLPHSQSP 540 SAMAPIAAQP LAAAASGRDF QSHSLYPAVT GSNGGGRGGN ISSPFSSSMG SSQLNLDNTA 600 TYAALGGGTG KALRYTGYGI RSLADEHNQL ISEALDLSSM ENQWRLPSYP QLLRQSTVNS 660 LSQMDRQPLS FLGNDFGTVG SVKQENQLRP FFDEWPKSRD SWPGLGDENT NLTSFSATQL 720 SMSTPMASSD FSAASSQSPN GIAALVTWSP WQAMFEGSTT SPSLSKIVVG AEQRQSTIIP 780 RLERGGSCFW RELPNFVTSD KITRVDVAVF CSTRAWQWPS ARTERKRAGY RCRCCAEDGD 840 SAKAIERAQV ARHQRNPYFY HTVLQLPSSR GPPTCCVIYS PRRAGMIGWC DALNVRCRLT 900 AFPIAVGMRA SWLAPRPATK CAIVVDRGIS HHRRKPLRWT AHHATQASRS SSATPLPCPS 960 RPRQASRHPA LLSASRSVPV GVACALSLAT VQQELPAAPC RPLLGDLPAA PPPPTGISQP 1020 GRHPTPTGLC SRRFTREEEP AAAGEEIEQQ APVLYLDERT GVAEHSGFTI TACIHQSVVK 1080 PPSALISFLA RLPP

Sequence ? help Back to Top

Protein Sequence Length: 1094 aa Download sequence Send to blast

MPPPAPSRAP AILQSPTWPM NGKRLAFTST SLAAQARRST VPSSSQQLDA ARIRKGARWA  60
LRGRTGGGMH AMHAGMPQVC HGRPGGGRRA EPPTEPFTRE HCQLPRACTE DIWVTPGKAG  120
SIRRSPSAMH ARTHGTTHPG GKELVVADRY GVMDATACRL SRATAVRRRF TLHSVWAAYM  180
STPPALVLRR TTATRETQGV PCLTGVRVAR MPTRAGSSCR SQPRRTRFVS PASPPRRTQA  240
TQPPIPTRQI RFIHPNPNPG KRDASRTATQ RETTRAIKAA ARARAKQRRE KGQHQASSPR  300
EGEQAAREKD KKGDGDAVCL SFPGRRRRPP LFHRHRLAPP LLPLLPALLS VRNDGSLLCS  360
PLSSPSCSRA LFLGTDVVAS VCCCRGNGGS GGVGEDAQLS GRWTRPLPFT PAQYEELEQQ  420
ALIYKYLAAG VAVPPDLVVP IRRGLDSLAT RFYGHPTRTA SSSSSYLLVL STPSCLSYGS  480
YFGKKLDPEP GRCRRTDGKK WRCSKEAAPQ SKYCERHMHR GRNRSRKPVE TQLLPHSQSP  540
SAMAPIAAQP LAAAASGRDF QSHSLYPAVT GSNGGGRGGN ISSPFSSSMG SSQLNLDNTA  600
TYAALGGGTG KALRYTGYGI RSLADEHNQL ISEALDLSSM ENQWRLPSYP QLLRQSTVNS  660
LSQMDRQPLS FLGNDFGTVG SVKQENQLRP FFDEWPKSRD SWPGLGDENT NLTSFSATQL  720
SMSTPMASSD FSAASSQSPN GIAALVTWSP WQAMFEGSTT SPSLSKIVVG AEQRQSTIIP  780
RLERGGSCFW RELPNFVTSD KITRVDVAVF CSTRAWQWPS ARTERKRAGY RCRCCAEDGD  840
SAKAIERAQV ARHQRNPYFY HTVLQLPSSR GPPTCCVIYS PRRAGMIGWC DALNVRCRLT  900
AFPIAVGMRA SWLAPRPATK CAIVVDRGIS HHRRKPLRWT AHHATQASRS SSATPLPCPS  960
RPRQASRHPA LLSASRSVPV GVACALSLAT VQQELPAAPC RPLLGDLPAA PPPPTGISQP  1020
GRHPTPTGLC SRRFTREEEP AAAGEEIEQQ APVLYLDERT GVAEHSGFTI TACIHQSVVK  1080
PPSALISFLA RLPP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2463	34	76