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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc02602.1.g00080.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 293aa MW: 31992.4 Da PI: 9.4202 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 62.3 | 8.6e-20 | 33 | 79 | 2 | 48 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
ek++sle+l++yFs+ +kdAA++Lgv++ ++KriCRq+GI+ W +R+
Zmw_sc02602.1.g00080.1.am.mk 33 EKTVSLEELQRYFSGRMKDAARSLGVGPATIKRICRQLGISKWLFRQ 79
799****************************************9997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 8.1E-5 | 4 | 72 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51519 | 14.072 | 15 | 103 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 5.9E-17 | 35 | 78 | IPR003035 | RWP-RK domain |
| SuperFamily | SSF54277 | 1.41E-19 | 173 | 242 | No hit | No description |
| PROSITE profile | PS51745 | 18.234 | 175 | 250 | IPR000270 | PB1 domain |
| SMART | SM00666 | 7.4E-20 | 175 | 268 | IPR000270 | PB1 domain |
| Gene3D | G3DSA:3.10.20.240 | 9.0E-23 | 176 | 242 | No hit | No description |
| Pfam | PF00564 | 2.3E-15 | 176 | 250 | IPR000270 | PB1 domain |
| CDD | cd06407 | 5.32E-33 | 176 | 246 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 293 aa Download sequence Send to blast |
MDNGEPKEGE DPEPQVSRRK RRRRKKLAKR ENEKTVSLEE LQRYFSGRMK DAARSLGVGP 60 ATIKRICRQL GISKWLFRQN AKANDSLGKV KRIFESVPYS QQSMAAPAAS HQAPAPAPAT 120 VHDPPAALLP YLSSAVEVTS SQGSCQEPPP PPPPLPPRMS TAIRKKPFHA GDTELVTVKA 180 SYRGDIVRFR VPSSAGVEAV MGEVAKRLGL ETDAFDVKYL DDDNEWVLLS CDADFQECLQ 240 VVPALSTASS SSGSGVAQPL VRLMVQEVLR GDNIGARSWS LSPTWSATFE PTV |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 17 | 25 | RRKRRRRKK |
| 2 | 18 | 22 | RKRRR |
| 3 | 18 | 25 | RKRRRRKK |
| 4 | 19 | 24 | KRRRRK |
| 5 | 19 | 25 | KRRRRKK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002453272.1 | 5e-92 | protein NLP3 | ||||
| TrEMBL | A0A3L6RS29 | 9e-90 | A0A3L6RS29_PANMI; Uncharacterized protein | ||||
| TrEMBL | C5XTY5 | 1e-90 | C5XTY5_SORBI; Uncharacterized protein | ||||
| STRING | Sb04g002940.1 | 2e-91 | (Sorghum bicolor) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP6269 | 29 | 39 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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