PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02594.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 314aa MW: 34583 Da PI: 10.5699 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.8 | 1.6e-31 | 71 | 175 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++g Zmw_sc02594.1.g00120.1.am.mk 71 FDKVVTPSDVGKLNRLVIPKQHAEKYfplgSAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVITKGWSRFVKEKRLDAG 151 89***************************955556888******************************************* PP -EEEEEE-.SS.SEE..EEEEE-S CS B3 78 DfvvFkld.gr.sefelvvkvfrk 99 D+v F + g+ +++l++ ++r+ Zmw_sc02594.1.g00120.1.am.mk 152 DTVSFGRGvGEnARGRLFIDWRRR 175 ******6557779999***99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.5E-41 | 65 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-29 | 68 | 179 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-26 | 69 | 156 | No hit | No description |
SMART | SM01019 | 1.2E-21 | 71 | 176 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.522 | 71 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-28 | 71 | 175 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDSMRRTPNS HEIIRGRERA TKEASERPTN LCGLAPSLLM TTELTAGPIR SGGGGGGGDD 60 AAVAVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLG SAANEKGLLL SFEDRTGKPW 120 RFRYSYWNSS QSYVITKGWS RFVKEKRLDA GDTVSFGRGV GENARGRLFI DWRRRPEPPA 180 PYYHHRLAIP SSLPFAPWAR AHYPAGIGGA GRTVLHLPPS PSSLYDSHRR RHDVYTPSTR 240 QVLLYRPHQQ QQATVVQESG LVRTPTSTPG QAEPPSVESS GSKRLRLFGV NLDCAAGSEE 300 GKGKGRRSAP PQPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-62 | 66 | 177 | 3 | 115 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-62 | 66 | 177 | 3 | 115 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798126.1 | 1e-125 | B3 domain-containing protein Os03g0120900-like | ||||
Swissprot | Q8LMR9 | 1e-102 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A1E5W4M9 | 1e-128 | A0A1E5W4M9_9POAL; B3 domain-containing protein | ||||
STRING | Pavir.Ia04549.1.p | 1e-120 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Publications ? help Back to Top | |||
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