PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02591.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 576aa MW: 63115.4 Da PI: 9.994

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02591.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	78.7	1.1e-24	2	103	276	374
GRAS 276 preseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354 +r+s er+ vEr ++g++i+ ++ egaer+ r+ ++W+ +e +GF+pv+ls++a++qa+lll +++ + y++ e+ Zmw_sc02591.1.g00130.1.am.mk 2 ARNSPERARVERCMFGERIRRAIGlEEGAERTDRMAGCREWHTLMEWCGFEPVRLSNYAMSQADLLLWNYDsKYKYSLVER 82 7899*****************7267899*************************************77789999 PP GRAS 355 sgslv.lgWkdrpLvsvSaWr 374 + +++ l W++rpL++vS+Wr Zmw_sc02591.1.g00130.1.am.mk 83 KPAFLsLAWEKRPLLTVSVWR 103 99999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.126	1	81	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-22	2	103	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MARNSPERAR VERCMFGERI RRAIGLEEGA ERTDRMAGCR EWHTLMEWCG FEPVRLSNYA 60 MSQADLLLWN YDSKYKYSLV ERKPAFLSLA WEKRPLLTVS VWRAVTAPRR VDIGEPLPVR 120 VARPEAPRRR WRANGRDGAY NGILPRTLGT PRRACIFLVL VYSISLRLAA SSTGSLVFGL 180 RRFGGAGAVV PAVAGFAIPS RGRRRSVSAT PSAGAPLPGE QGVGMEPPKQ QQPQVPQQDA 240 ARVDEKQHDA DGFMYSTNNG TRARDVMTHS FGAGYATRSD EEGLGGVYGG NDNPGSEVKE 300 KEKRATSRAT NPRPRSRGTP EAADATIRLE PPHSFPTDAQ HHAESALGAC RRTSSLRVPQ 360 LHWATLHRES GAFQARAPAA LENASRRHAC FFLMYPHSLR AAASSSGGAR LVRFSLGRSG 420 GAVAAPGFGR SFSATPAASA PVQGARGVGM EQSKQQQQPQ PQQDAVHGDA NTRDGGAHKG 480 HWYVLGDNRA IERAVYEPSS APYNSLVSGV GRDPITHSFG EGYWTRAEEE GFGGVYARGD 540 DDEERRHSHP EYDTSQGCEV REKEKGRHFK DEKHAN

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MARNSPERAR VERCMFGERI RRAIGLEEGA ERTDRMAGCR EWHTLMEWCG FEPVRLSNYA  60
MSQADLLLWN YDSKYKYSLV ERKPAFLSLA WEKRPLLTVS VWRAVTAPRR VDIGEPLPVR  120
VARPEAPRRR WRANGRDGAY NGILPRTLGT PRRACIFLVL VYSISLRLAA SSTGSLVFGL  180
RRFGGAGAVV PAVAGFAIPS RGRRRSVSAT PSAGAPLPGE QGVGMEPPKQ QQPQVPQQDA  240
ARVDEKQHDA DGFMYSTNNG TRARDVMTHS FGAGYATRSD EEGLGGVYGG NDNPGSEVKE  300
KEKRATSRAT NPRPRSRGTP EAADATIRLE PPHSFPTDAQ HHAESALGAC RRTSSLRVPQ  360
LHWATLHRES GAFQARAPAA LENASRRHAC FFLMYPHSLR AAASSSGGAR LVRFSLGRSG  420
GAVAAPGFGR SFSATPAASA PVQGARGVGM EQSKQQQQPQ PQQDAVHGDA NTRDGGAHKG  480
HWYVLGDNRA IERAVYEPSS APYNSLVSGV GRDPITHSFG EGYWTRAEEE GFGGVYARGD  540
DDEERRHSHP EYDTSQGCEV REKEKGRHFK DEKHAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-52	1	103	273	375	GRAS family transcription factor containing protein, expressed