PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02591.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 348aa    MW: 37946.1 Da    PI: 7.5788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02591.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12176223355
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Zmw_sc02591.1.g00080.1.sm.mkhc 176 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 223
                                     67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.809173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17176242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-17177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.98E-14178227No hitNo description
SMARTSM003531.0E-14179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDQAALAA LMPQRYDYAA  60
PAAAEHRQRK AARVNTPSWD SCITEQGSPA DSSSPTILSF GGHAAATAFS KADAQVPNAP  120
SYYGHSATAQ VKAPKQEVVD AGVSPFHARS VKRSYDAMVA AEAQAPVPSR PASQNQDHIL  180
AERKRREKLS QRFIALSKIV PGLKKMDKAS VLGDAIKYVK QLQEQIKGLE NEARRRPVEA  240
AVLVKKSQLC ADDDENFLGG GAGALPEIEA RVSDRTVLVK IHCESRKGAL ITALSEVERL  300
GLTIMNTNVL PFTSSFLDIT ILATIGDEFC LSVKDIVKKL NQAFKPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13177232863Transcription factor MYC2
5gnj_B2e-13177232863Transcription factor MYC2
5gnj_E2e-13177232863Transcription factor MYC2
5gnj_F2e-13177232863Transcription factor MYC2
5gnj_G2e-13177232863Transcription factor MYC2
5gnj_I2e-13177232863Transcription factor MYC2
5gnj_M2e-13177232863Transcription factor MYC2
5gnj_N2e-13177232863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.10.0transcription factor bHLH18
TrEMBLA0A0A9DGI50.0A0A0A9DGI5_ARUDO; Uncharacterized protein
TrEMBLK4ABY60.0K4ABY6_SETIT; Uncharacterized protein
STRINGSi036393m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572