PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02585.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 772aa    MW: 84084.3 Da    PI: 5.4193
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02585.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.1e-20155210156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t +q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Zmw_sc02585.1.g00060.1.am.mk 155 KKRYHRHTLHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 210
                                   688899***********************************************998 PP
2START26.41.4e-09358431369
                                   HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                         START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                                     +a++elv++a++++p+W       +++++e+ + f+ + +      ++ea+r+s+vv+m+   lve+l+d++
  Zmw_sc02585.1.g00060.1.am.mk 358 VVAAMDELVQMAQLDAPLWGMGTigGQLDEEEYARMFPGGIGprqydLRSEASRDSAVVIMTRDSLVEILMDTM 431
                                   6789***************99888*************88888******************************98 PP
3START477.2e-16446512140206
                                   TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 140 ssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                    s+  +   pS+ +  p + +   vtwvehv++++r++h+l+++lv+sgla+gak+wv tl+rqce+
  Zmw_sc02585.1.g00060.1.am.mk 446 ESYFSCLEVPSQAIWLPYPRNAQWVTWVEHVEVDDRSVHNLYKPLVNSGLAFGAKRWVGTLDRQCER 512
                                   567778899999999****99999*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22137210IPR009057Homeodomain-like
SuperFamilySSF466891.5E-18142210IPR009057Homeodomain-like
PROSITE profilePS5007116.455152212IPR001356Homeobox domain
SMARTSM003892.8E-18153216IPR001356Homeobox domain
PfamPF000462.0E-17155210IPR001356Homeobox domain
CDDcd000861.97E-18155210No hitNo description
PROSITE patternPS000270187210IPR017970Homeobox, conserved site
SuperFamilySSF559611.1E-9348514No hitNo description
PfamPF018527.6E-5358431IPR002913START domain
PROSITE profilePS5084812.744437515IPR002913START domain
PfamPF018523.3E-11444512IPR002913START domain
SuperFamilySSF559611.31E-24534762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MRYYRLDYKY PSSLPGVESK QGSIRALVRA RTLALDLLPR VRLRGVQATD LPALPSSVMT  60
PGRMIGRNGV AYGSSSAMSL NQVDLLDSQH LQQAFQQHLF DQIPAPTLDS GDNMIHGHAD  120
TLVDEFESKS CSENPDGTSG EDGQLEDPNQ RPNKKKRYHR HTLHQIQEME AFFKECPHPD  180
DKQRKELSRE LGLEPLQVKF WFQNKRTQMK ASAITLDTLY YIALNQHERQ ENAQLRAEND  240
KLRSENMRCG GPAALGEMSF DEHHLRLENA RLRDEIDRIS GIAAKHVGKP MVSFPLLPSP  300
LAAAAARSPL DLAGAYGVQP PSLTADHIFG AGAGAGDLLR SVSTGHLDAD KPMIVELVVA  360
AMDELVQMAQ LDAPLWGMGT IGGQLDEEEY ARMFPGGIGP RQYDLRSEAS RDSAVVIMTR  420
DSLVEILMDT MSMEFQVPSP LVPTRESYFS CLEVPSQAIW LPYPRNAQWV TWVEHVEVDD  480
RSVHNLYKPL VNSGLAFGAK RWVGTLDRQC ERLASAMASN IPNGDLGVIT SIEGRKSMLK  540
LAERMVTSFC GGVTASAAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWIP  600
IPPKRVFDFL RDETSRSEWD ILSNGGAVQE MAHIANGRDH GNCVSLLRVN SANSNQSNML  660
ILQESCTDAS GSYVVYAPVD VVAMNVVLNG GDPDYVALLP SGFAILPDGP PGAAAEGESP  720
GGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKAAICGEGN PQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972697.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLK3YGB70.0K3YGB7_SETIT; Uncharacterized protein
STRINGSi013285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]