PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02565.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 390aa MW: 43874.7 Da PI: 6.7923

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02565.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.6e-11	80	109	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+ +NReAAr+sR+RKka++++Le+ Zmw_sc02565.1.g00020.1.sm.mkhc 80 AKTERRLVQNREAARKSRLRKKAYVQQLET 109 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.9E-7	77	153	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	79	123	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-8	80	110	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.4E-8	81	125	No hit	No description
SuperFamily	SSF57959	2.49E-7	81	124	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.5E-29	161	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MSQMELVSPA SSALRQEVMM VTTDDYSYSY RPGLAAAAPP PPAPAAAPSF QQQPMQQLHG 60 GEHDKRKHGS ARKDGKSVDA KTERRLVQNR EAARKSRLRK KAYVQQLETS RIRLQQVEHE 120 LQRARSQGLF VGGCSAAGDM SSGAAMFELE YARWLDDDSK QLEELRGGLQ AQLLDGNLGL 180 IVEECMQHYD ELFQLKAELA RSDVFHLLTG IWATPAERCF FWMGGFRPSE LLKILMQQLD 240 PMTEQQMMGI CNLQQSSEQA EEALAQGLHQ LHQSLADTVA AGTLNDGVVT PNYMNLMALA 300 LEKLASLESF YQQADNLRQQ TLHQMRRILT TRQAARCFLS IGEYYRRLRA LSNLWASRAR 360 ENFNGTESIS PTATELQAML QQQQNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MSQMELVSPA SSALRQEVMM VTTDDYSYSY RPGLAAAAPP PPAPAAAPSF QQQPMQQLHG  60
GEHDKRKHGS ARKDGKSVDA KTERRLVQNR EAARKSRLRK KAYVQQLETS RIRLQQVEHE  120
LQRARSQGLF VGGCSAAGDM SSGAAMFELE YARWLDDDSK QLEELRGGLQ AQLLDGNLGL  180
IVEECMQHYD ELFQLKAELA RSDVFHLLTG IWATPAERCF FWMGGFRPSE LLKILMQQLD  240
PMTEQQMMGI CNLQQSSEQA EEALAQGLHQ LHQSLADTVA AGTLNDGVVT PNYMNLMALA  300
LEKLASLESF YQQADNLRQQ TLHQMRRILT TRQAARCFLS IGEYYRRLRA LSNLWASRAR  360
ENFNGTESIS PTATELQAML QQQQNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001104893.1	0.0	transcription factor LG2
Refseq	XP_008673408.1	0.0	transcription factor LG2 isoform X2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A2T8IJA5	0.0	A0A2T8IJA5_9POAL; Uncharacterized protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]