PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02558.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARR-B
Protein Properties Length: 511aa    MW: 55393.3 Da    PI: 6.7508
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02558.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.96e-25128180255
                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   +r +W+ e H++Fve+v+qL G +k +Pk+ilelm+++gLt+ehv+SHLQkYRl
  Zmw_sc02558.1.g00100.1.sm.mk 128 KRFQWSGERHRKFVEVVKQL-GMDKVVPKNILELMNLEGLTREHVASHLQKYRL 180
                                   799*****************.********************************7 PP
2Response_reg38.56e-141279163
                                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH......ESEEEEESSCTTSEHHHHHH CS
                  Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd......pDlillDiempgmdGlellk 63
                                  vl vdD+ + ++l+ + l++ +y +v++a ++e ale+l++++      ++++++D+ mp+mdG++ll+
  Zmw_sc02558.1.g00100.1.sm.mk 12 VLAVDDDGVSLMLISRQLQHCKY-NVTTAMHAEMALEILRARRdhgadqFHMVITDVHMPEMDGFKLLE 79
                                  799********************.***************9888899999*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.6E-18882No hitNo description
SuperFamilySSF521722.28E-16882IPR011006CheY-like superfamily
SMARTSM004483.1E-610164IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.14311170IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-101280IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.46E-121388No hitNo description
PROSITE profilePS5129410.861124183IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-26125185IPR009057Homeodomain-like
SuperFamilySSF466894.48E-18125184IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-22128181IPR006447Myb domain, plants
PfamPF002497.1E-6131179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDADEFRSRL RVLAVDDDGV SLMLISRQLQ HCKYNVTTAM HAEMALEILR ARRDHGADQF  60
HMVITDVHMP EMDGFKLLEI VSLEMDIPSR DGEAENGANH NIKCSTNKRK DGCGTGKEKK  120
KTSAPKRKRF QWSGERHRKF VEVVKQLGMD KVVPKNILEL MNLEGLTREH VASHLQKYRL  180
FLKKLGSGTF KCNGPFTDEA MRSAGNSINI NGHGRFQPNP EHGSSRYYHP SIPLVGSSGA  240
SSNPFARLNS FAAFGKQSLL PTQSVQLMTQ RNLGNPLKDM GPVGYGGNMP QVAAPGSHYS  300
LSNFIYAGTS NTNMCIPPSP SGIISFANPS NGMPLDQQPL GSIAPFNGSP NSLQTVASWK  360
GEISEAGSLK GDMHTINQLS RLAVSSGPNY EIQNQIVAVT GIATTTPKTY FNENVAPPYI  420
GSSTNCIVMT NDTSAPGGAS MAVSTLPSLQ MNEPVLSSYV LTGGAEGGAV DQQAVGEQLN  480
DNNEFLTAPS TTQNGKNDDL DDFLDDWLNE A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-19127183157Transcription factor LUX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107128KRKDGCGTGKEKKKTSAPKRKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1872246