PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02556.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 25639.3 Da PI: 9.887 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32 | 2.3e-10 | 161 | 223 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 e++ +tl de+ ++++ ++ ++++ l++GW +F+ ++g+++gD vF+l++ ++f +v+++r+ Zmw_sc02556.1.g00090.1.am.mk 161 EKDSIVTLVDENDQEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATVFQLIKPTTF--KVHIVRA 223 233469**************..555555..9***********************987777..8888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0041 | 135 | 224 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.54E-13 | 139 | 222 | No hit | No description |
SuperFamily | SSF101936 | 6.87E-12 | 161 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-7 | 161 | 223 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-10 | 161 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.305 | 166 | 224 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MREGNERSNV ISSSFIEEAI PSGTQARLPP MLSQDLGRQC VPLAGLFGLK FPPPLTRPIL 60 IRFSRAPFPG NPPGPEREMA AVAKQGISAY EAAREKTVQE NKRKIEALNL HHLSAAINMA 120 PKTPSPMKQK RRRIIEAAVV TPSPARRSRR LANLPEVKYA EKDSIVTLVD ENDQEFDTNY 180 LAYKKGLSGG WAGFALSHGI RDGDATVFQL IKPTTFKVHI VRAASDDDDE AAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 133 | KRRRI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797698.1 | 6e-41 | B3 domain-containing protein Os03g0184500-like | ||||
Swissprot | Q10QS9 | 7e-38 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A317Y1P1 | 1e-44 | A0A317Y1P1_MAIZE; B3 domain-containing protein | ||||
STRING | OPUNC03G06010.1 | 1e-36 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Publications ? help Back to Top | |||
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