PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02545.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 394aa MW: 41940.2 Da PI: 6.101 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.8 | 7.4e-19 | 309 | 343 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C ttkTp+WR gp+g+ tLCnaCGl+y kg+ Zmw_sc02545.1.g00050.1.am.mk 309 CSHCSTTKTPQWRAGPRGPGTLCNACGLRYTDKGS 343 ******************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.123 | 303 | 342 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.0E-16 | 303 | 358 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-15 | 305 | 365 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-15 | 307 | 342 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.79E-19 | 308 | 365 | No hit | No description |
Pfam | PF00320 | 1.8E-16 | 309 | 343 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 309 | 334 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MPLQPSTTTM SPFFLYDEKE GIDDAPANLE DGWPRGGLSC PDELNNVVPV EYFNFAKFSA 60 DNAPDDVLGL DGGALSDTSG HAAPTSAQPT ASDSAGPCGA LDGAAATSFV PPFPQPGFVD 120 VLDIDSSPPL PDDLSCLVAT FLALSWPAQH TLYGVIPDLA PPLPAQDSES LNCVVAPYMA 180 PPLPAPDVAP RSVPLLPAQH AVAGAVVPDT APPLKAHDTV PPVGPPETCS TSSGCVSSMP 240 WEHESACVVP RKQRHRSVTR RNPTWLPKSQ FYEKPPAAPR AALSSLEAGG SGKSPVVKRR 300 RNRERDRVCS HCSTTKTPQW RAGPRGPGTL CNACGLRYTD KGSLLETYRP TTSPGFDSGK 360 HSNRQSKAAK IMEKTELTKV MDDRYQRRLS ETSP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20691 | 3 | 7 |