PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02538.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 263aa    MW: 29000.8 Da    PI: 8.8339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02538.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-1383128454
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Zmw_sc02538.1.g00140.1.es.mkhc  83 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 128
                                     799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.3979128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1982153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-1282132No hitNo description
Gene3DG3DSA:4.10.280.106.4E-1983150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1083128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-1685134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEATSRASNT NLHPAATANE GMLSFSSTPT TRPAKSESDH SDLDASVREV ESSRVVEPPP  60
PEAEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS KMDKASLLGD  120
AISYINELRG KLTALESDKE TMQSQIEALK KERDARPAPQ AGGFGHDAGP RCHAVEIDAK  180
ILGLEAMIRV HCHKRNHPSA RLMTALRELD LDVCHASVSV VEDLMIQQVA VKMASRIYSQ  240
NQLNAALYSR LAEPGSVVGR ESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-3577156281Transcription factor MYC2
5gnj_B5e-3577156281Transcription factor MYC2
5gnj_E5e-3577156281Transcription factor MYC2
5gnj_F5e-3577156281Transcription factor MYC2
5gnj_G5e-3577156281Transcription factor MYC2
5gnj_I5e-3577156281Transcription factor MYC2
5gnj_M5e-3577156281Transcription factor MYC2
5gnj_N5e-3577156281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00085PBMTransfer from AT5G46760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698381.11e-164LOW QUALITY PROTEIN: transcription factor MYC2-like
SwissprotQ336P51e-152MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A1E5W7331e-164A0A1E5W733_9POAL; Transcription factor MYC2
STRINGPavir.J38781.1.p1e-167(Panicum virgatum)
STRINGSi039973m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]