PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02526.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 310aa    MW: 34739.3 Da    PI: 7.439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02526.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18242276135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C++C ++kTp+WR gp g+ktLCnaCG+++++ +l
  Zmw_sc02526.1.g00050.1.sm.mkhc 242 CAHCMSSKTPQWRAGPLGPKTLCNACGVRFKSGRL 276
                                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.05154206IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-5157190No hitNo description
Gene3DG3DSA:3.30.50.107.5E-6159187IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.1E-14236290IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.91240272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-14240274IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-13240299No hitNo description
CDDcd002022.28E-12241298No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003205.1E-16242276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDLQSANAAA DSLGDLYLHQ AALESDDSNP DWLHIYEKDR FSSSASFPNP VSGKPITTMA  60
DQSAGNPTLL TSSYSNGRQR KRSLASVLSD DDDQYTIPLV IEPPLLLMDQ KHWMAESELI  120
LPQKEKDQEL CQQQGQEYEE LECEEGELTQ LPGEQLLKRC NSCLSCHAPT WRHGPLDFKM  180
LCNACSPKVK PENRVTTATK KQCALGTNKK QEQGKRGDKK MIKKIANASE RELPEEPLMR  240
VCAHCMSSKT PQWRAGPLGP KTLCNACGVR FKSGRLLPEY RPANSPTFES HVHSNSHKKV  300
LQLRQADRHN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963249.11e-120GATA transcription factor 2
TrEMBLA0A0A8XNM81e-128A0A0A8XNM8_ARUDO; GATA transcription factor
STRINGSi022727m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656