PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02517.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 399aa MW: 42447.8 Da PI: 4.7168

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02517.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.6	2.6e-28	116	173	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs +pr+YYrC++ +C+++k+ver++ dp +++ tY+geH h+ Zmw_sc02517.1.g00100.1.am.mk 116 DLWAWRKYGQKPIKGSSYPRGYYRCSTDkDCKARKQVERCRADPGTLILTYTGEHSHP 173 99*********************9998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-28	110	175	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-25	113	175	IPR003657	WRKY domain
SMART	SM00774	1.5E-33	114	174	IPR003657	WRKY domain
PROSITE profile	PS50811	29.597	116	175	IPR003657	WRKY domain
Pfam	PF03106	1.9E-23	116	173	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MEGDLGWCGA GSSNNWDLHA VVRFACGDTS VPPSDDAFPW PGPLQPLLTD SAVDDPSRRP 60 QPSSPGNEQP TTQQPARAEE APAKPRAKPT RSKRKSKKRQ VNKEVTRVPV GSPSPDLWAW 120 RKYGQKPIKG SSYPRGYYRC STDKDCKARK QVERCRADPG TLILTYTGEH SHPVPLYRNS 180 LAGTTRSKPQ QQQSASSTAE ETQVTQQAQS PPVSESAGLS PSPADAKPQQ QGSPSTCDRL 240 SPSTPLRSPS VSFEYEDEED DDTLAVRLVL EETEMAAEDD TLQFFQPDEL ARPGFPGSEP 300 APASGNCSGA CADAMLFPNN KPDGPVGPLG PVITGGAEDV MLFQFQNPVE PQPSPASASV 360 ANGSAGTASL INFVDEKFSI SGLSAWEAAA AAAASGWGL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MEGDLGWCGA GSSNNWDLHA VVRFACGDTS VPPSDDAFPW PGPLQPLLTD SAVDDPSRRP  60
QPSSPGNEQP TTQQPARAEE APAKPRAKPT RSKRKSKKRQ VNKEVTRVPV GSPSPDLWAW  120
RKYGQKPIKG SSYPRGYYRC STDKDCKARK QVERCRADPG TLILTYTGEH SHPVPLYRNS  180
LAGTTRSKPQ QQQSASSTAE ETQVTQQAQS PPVSESAGLS PSPADAKPQQ QGSPSTCDRL  240
SPSTPLRSPS VSFEYEDEED DDTLAVRLVL EETEMAAEDD TLQFFQPDEL ARPGFPGSEP  300
APASGNCSGA CADAMLFPNN KPDGPVGPLG PVITGGAEDV MLFQFQNPVE PQPSPASASV  360
ANGSAGTASL INFVDEKFSI SGLSAWEAAA AAAASGWGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-18	103	175	6	79	Disease resistance protein RRS1
5w3x_D	5e-18	103	175	6	79	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812935.1	1e-102	WRKY transcription factor 22-like
TrEMBL	A0A2T7DY59	1e-103	A0A2T7DY59_9POAL; Uncharacterized protein
STRING	Pavir.Da00956.1.p	1e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12562	25	36