PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02515.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 401aa MW: 43779.5 Da PI: 7.537 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.9 | 1.9e-40 | 162 | 240 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Zmw_sc02515.1.g00100.1.am.mk 162 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVItAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 240 6******************************99835679*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-33 | 157 | 225 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.274 | 160 | 238 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-37 | 161 | 241 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.8E-31 | 163 | 237 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MMNIPAAGNS CDEFPYVSPS PPPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNAAA 60 AHQTTIACHG AHDILQFYPA ASSHYLAGGG NPYCHHFGGS AYQSYYQQAA QAAAPEYYFP 120 TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR 180 RHKVCEHHSK APVVITAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP 240 SDADAADKKR AQANKAAASK DSTSTNAILF SSTKLSTEVG SSSKSNMDTG DGFTTQIQGS 300 ALFSKEQDQG MDLGEVVKEA VDPKGKASMQ QQHANHHGMN HHGFPFPTSS GSCFPQSQAV 360 ASDNTSNIAQ LQEPSLAFHQ HHQHSNILQL GQAMFDMDFD H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 163 | 237 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 232 | 249 | RRRRKSKPSDADAADKKR |
2 | 233 | 238 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824698.1 | 0.0 | protein LIGULELESS 1-like | ||||
Swissprot | Q01KM7 | 0.0 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A3L6Q0D9 | 0.0 | A0A3L6Q0D9_PANMI; Protein LIGULELESS 1-like | ||||
STRING | Si022315m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |