PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02503.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 263aa    MW: 28247.2 Da    PI: 10.0858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02503.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-1173124554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54 
                                   h+e+ErrRR+riN  +++Lr+++P     +a  + ++Ka+ L ++ve +k L
  Zmw_sc02503.1.g00010.1.am.mk  73 HSEAERRRRERINAHLATLRRMIPDTKqvRAIPGTMDKATLLARVVEQVKAL 124
                                   9************************55478888999******9999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1159130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.76468124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-873124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-1273126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-874130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.879163242IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.2E-4164229No hitNo description
CDDcd048733.93E-7165231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAACEALREG QKPRTELRPC DGCDSSVCGG PFRLPRQASS AVTVAPQPEM SSSTGSGSGS  60
GKSATEARAL KIHSEAERRR RERINAHLAT LRRMIPDTKQ VRAIPGTMDK ATLLARVVEQ  120
VKALKTNASE VTRTLPFPPE SDEVSIECYT GGVSGAGKAL YITASVSCAD RPDLIAGIVR  180
AFRGLRLRAL RADTTSLGGR VRHVFTLLRE EEDGSAGASI RSMEEAVRQA LAKAASPETV  240
YGSSPFQSKR QRMMESRCSV MPV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.12e-97putative transcription factor bHLH107
TrEMBLA0A0A9G1N91e-100A0A0A9G1N9_ARUDO; Uncharacterized protein
STRINGLPERR01G03590.13e-99(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678