PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02493.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 328aa    MW: 35123.2 Da    PI: 8.6563
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02493.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.78.3e-5491186297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyvep
  Zmw_sc02493.1.g00060.1.am.mk  91 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCRKEKRKTVNGDDVCWAFGALGFDDYVEP 171
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   ++ yl+++re+eg++
  Zmw_sc02493.1.g00060.1.am.mk 172 MRRYLHRFREVEGDR 186
                                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-5086196IPR009072Histone-fold
SuperFamilySSF471139.83E-3893200IPR009072Histone-fold
PfamPF008082.9E-2696159IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.2E-16124142No hitNo description
PROSITE patternPS006850127143IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.2E-16143161No hitNo description
PRINTSPR006159.2E-16162180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEPGIKEGTR GRASSAADSM SSSSGRAGGR CSRGEGESID RLAAEPATCQ LPIGTKAREQ  60
EAVQLARMAD HLGQPDDDGR RPAGSAAEEI KEQDRLLPIA NVGRIMKQIL PPNAKISKEA  120
KETMQECVSE FISFVTGEAS DKCRKEKRKT VNGDDVCWAF GALGFDDYVE PMRRYLHRFR  180
EVEGDRAAAA ASSRGAGEGP DHHASGSGAG GAGPSGTGHF MFGAVDSSRQ SLFYDQVAGL  240
VNLHGLYCAF ARESRERERE RESSAVDSVG STITCRGAGR HHRRHARAAR LVGRCRAPRA  300
SITPAPPREK KTASLATPAS CVHMWSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-4290181697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JTD02e-72A0A0E0JTD0_ORYPU; Uncharacterized protein
STRINGOPUNC01G42180.13e-71(Oryza punctata)
STRINGOPUNC01G42210.13e-73(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887