PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02479.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 301aa    MW: 33383 Da    PI: 6.513
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02479.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY871.7e-27139199158
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   ldDg++WrKYGqKe+ g+++prsY+rCt++   +Cp++k+v+r++ dp v++++Y+g H +
  Zmw_sc02479.1.g00090.1.sm.mk 139 LDDGFSWRKYGQKEILGAKYPRSYFRCTYRstqNCPATKQVQRTEGDPLVFDVVYHGAHSC 199
                                   59**************************99899**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-27126200IPR003657WRKY domain
SuperFamilySSF1182901.57E-24136199IPR003657WRKY domain
SMARTSM007741.6E-39139201IPR003657WRKY domain
PROSITE profilePS5081121.081139198IPR003657WRKY domain
PfamPF031066.2E-26140199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDESGGGGGR RTLASELARV QTIVRELEAN MDQQDLPAAA MEICGELASR VDRSLRIVRS  60
WVPGSASDWS TRGDGDTAGT GDAATDARFK RRQVDCSFIW RRYSASYYSW LTNVSMCRKG  120
NPSVQRQVRV PTARWTTALD DGFSWRKYGQ KEILGAKYPR SYFRCTYRST QNCPATKQVQ  180
RTEGDPLVFD VVYHGAHSCV QAAQRSADQQ HLPPGLAGQE QTSPRAPETG GGLHAGFEPM  240
TPTFSSAPAG ADFGGLSPMS LEWQLRSGYE AGMEVERQLE EFFSNPCDSF QWDYQDLYAA  300
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18139199868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.12e-90probable WRKY transcription factor 30
TrEMBLA0A2T8KIJ82e-93A0A2T8KIJ8_9POAL; Uncharacterized protein
STRINGPavir.J01329.1.p1e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183