PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02479.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 500aa MW: 54109.1 Da PI: 9.6274

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02479.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	155.1	1.2e-48	312	408	2	93
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfe 77 +eqdrflPian+srim++++P+n+ki+kdake+vqecvsefisf+tse asdkc +ekrktingddl+w+++tlGfe Zmw_sc02479.1.g00010.1.am.mk 312 KEQDRFLPIANISRIMRRAVPENGKIAKDAKESVQECVSEFISFITSEsvaylASDKCMKEKRKTINGDDLIWSMGTLGFE 392 89*******************************************9887778*********************** PP NF-YB 78 dyveplkvylkkyrel 93 +yveplk+ylk yrel Zmw_sc02479.1.g00010.1.am.mk 393 EYVEPLKLYLKIYREL 408 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-44	306	408	IPR009072	Histone-fold
SuperFamily	SSF47113	8.78E-32	314	409	IPR009072	Histone-fold
Pfam	PF00808	7.1E-22	317	386	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.6E-15	345	363	No hit	No description
PRINTS	PR00615	4.6E-15	369	387	No hit	No description
PRINTS	PR00615	4.6E-15	388	406	No hit	No description
Pfam	PF05678	7.5E-10	433	459	IPR008889	VQ

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MSNHNCAEQT TEQRLLLVSQ ITAGAQDYAN TLQGGIYLFT LDLQRAIEPK TIGGADELSE 60 LITTGEFWLR STSAPATTKK TASSRRRRSV PPRHRITASE NLARARGRRP AVQAQPLGSA 120 PAVGVSEIWR ARDFWNGGSG PLRRAAGAEA EPAQGKNRGG RPEDGLVASK ERARVVPNAC 180 RPQSAPRQVK EKKTRGNAGS RPGGWQGSWL EMGCCDRMMW DGIAADPSPT PETALQIRRP 240 VASSPRALPP QSTALIPSAI SVSVPVSKKS RHRHRSPLSP LACPYNGGGC CFPVPGFAMS 300 EGEFTQEGAG AKEQDRFLPI ANISRIMRRA VPENGKIAKD AKESVQECVS EFISFITSES 360 VAYLASDKCM KEKRKTINGD DLIWSMGTLG FEEYVEPLKL YLKIYRELPY GIDQELPNSM 420 SRDDEAKPLT VKIIETVFVE ADTADEFKSV VQRLTGKDAV APPEETTGRS PRAAPRIGAG 480 KEGGSRGDRE GGASGTKQNG

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MSNHNCAEQT TEQRLLLVSQ ITAGAQDYAN TLQGGIYLFT LDLQRAIEPK TIGGADELSE  60
LITTGEFWLR STSAPATTKK TASSRRRRSV PPRHRITASE NLARARGRRP AVQAQPLGSA  120
PAVGVSEIWR ARDFWNGGSG PLRRAAGAEA EPAQGKNRGG RPEDGLVASK ERARVVPNAC  180
RPQSAPRQVK EKKTRGNAGS RPGGWQGSWL EMGCCDRMMW DGIAADPSPT PETALQIRRP  240
VASSPRALPP QSTALIPSAI SVSVPVSKKS RHRHRSPLSP LACPYNGGGC CFPVPGFAMS  300
EGEFTQEGAG AKEQDRFLPI ANISRIMRRA VPENGKIAKD AKESVQECVS EFISFITSES  360
VAYLASDKCM KEKRKTINGD DLIWSMGTLG FEEYVEPLKL YLKIYRELPY GIDQELPNSM  420
SRDDEAKPLT VKIIETVFVE ADTADEFKSV VQRLTGKDAV APPEETTGRS PRAAPRIGAG  480
KEGGSRGDRE GGASGTKQNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	1e-39	312	407	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-39	312	407	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331