PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02470.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 488aa    MW: 52548.2 Da    PI: 7.7738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02470.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30219277259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +v+++tYeg+Hnh+
  Zmw_sc02470.1.g00080.1.am.mk 219 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCSVRKQVQRCAEDRTVLITTYEGSHNHP 277
                                   7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-33203279IPR003657WRKY domain
SuperFamilySSF1182902.09E-27211279IPR003657WRKY domain
PROSITE profilePS5081129.861213279IPR003657WRKY domain
SMARTSM007741.4E-35218278IPR003657WRKY domain
PfamPF031062.5E-26220277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MTMSMRAEIK EVLVLFWVFS SSSSPLCGQL ESTKVELRQS KEEIQRLRKI VSDLSARYQS  60
LHAHFVAFMQ QQRNLEVPRP EQQLNLDPEK KEQDASPLPK QFISLDVGAD AAPSPGSSLA  120
GSAVPPQLMD YSPGGTGTGN GGGRMPLPTF DQHRHRLHER VGSPEEAPPP QHVTQGWLAS  180
PSKVPKFLPA KTPEAVPEAA TMRKARVSVR ARSEAAMISD GCQWRKYGQK MAKGNPCPRA  240
YYRCTMAAGC SVRKQVQRCA EDRTVLITTY EGSHNHPLPP AAMAMASTTA AAASMLLSGS  300
MPSADGSLMA GSNFLARAVL PCSSSVATIS ASAPFPTVTL DLTQPAPPAA SSSSGAGGSS  360
GTVQPMASGG ADNSYADFER SGWQHDTEGA ESISRFRCPS LRPGHAFDIN PVHVARSTVP  420
WSLLNRPTVE ERRADLVTER TDEVEYCGRL DRPAPFGASA VEYNAAWQSS ASERELLAAF  480
TIVDQVYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22209279877Probable WRKY transcription factor 4
2lex_A2e-22209279877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963595.11e-126WRKY transcription factor 42
SwissprotQ9XEC31e-93WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A368QET01e-126A0A368QET0_SETIT; Uncharacterized protein
TrEMBLK3ZC051e-125K3ZC05_SETIT; Uncharacterized protein
STRINGPavir.Ca00949.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734