PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02464.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 663aa MW: 70086.9 Da PI: 10.4642

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02464.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.8	3.2e-35	243	303	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ al+cprCd+tntkfCyynny++ qPry+CkaC+ryWt+GG+ rn+PvGg++rk++k+s Zmw_sc02464.1.g00060.1.am.mk 243 PDVALPCPRCDATNTKFCYYNNYNMLQPRYLCKACKRYWTHGGSQRNIPVGGASRKQNKRS 303 567899**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	241	302	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-30	246	301	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.251	247	301	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	249	285	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MLWSWADPDA DTRRPVPSHH PHAVPPFHVY GSAAVTLGIQ MPLRSLNIGA REQHKHQRNN 60 TARLLVEQAV GMLPPGCTVD AWSARSTRTS AVLPCRASCL HGNSVSISIS SCMDRVLADV 120 ICTPIIFTPF PRTARAVLSL ISSLSSRLTT SSIKRKGALS PLGRSEHSSS PPTRSRARFF 180 WQENLFCGSE EKMTNSKKSN TSAGASSAHS NNIQQEARNM RQARAARQQV AANAGERRPR 240 PQPDVALPCP RCDATNTKFC YYNNYNMLQP RYLCKACKRY WTHGGSQRNI PVGGASRKQN 300 KRSSASLSLP AAASSSSVIN KELQQQLLPA APMIEPAADF NVFPSFMSTG FEHHSNQLPF 360 SPAPGPLPLP TLLPPAPVLA PDAGTPSFLD MLRGGFLDYQ TNGFYAPATP STGMEAPPPL 420 PFGGAAQPGV SGGRQGGGAA PTGGHVDATA AGQGAAWPKP QGRTLSQPFL SPSRHIVAVR 480 ASFFSTPPPS PLSAPDPTPP RTATAQTSPS AVSLPSARHS LCSLSPTCVL YRTSAARCRA 540 HPSPPPNPSP GLCTTPPLAS LVVPYARGRG VHSALLVPVV SSLPRQSVNR IGCGIDGSGF 600 ERQLGTVVAA CSGRGVARLS LLACTPVHTR ALPALHPHSC ARLSSYQLVA SVEAGGCCFA 660 HVI

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MLWSWADPDA DTRRPVPSHH PHAVPPFHVY GSAAVTLGIQ MPLRSLNIGA REQHKHQRNN  60
TARLLVEQAV GMLPPGCTVD AWSARSTRTS AVLPCRASCL HGNSVSISIS SCMDRVLADV  120
ICTPIIFTPF PRTARAVLSL ISSLSSRLTT SSIKRKGALS PLGRSEHSSS PPTRSRARFF  180
WQENLFCGSE EKMTNSKKSN TSAGASSAHS NNIQQEARNM RQARAARQQV AANAGERRPR  240
PQPDVALPCP RCDATNTKFC YYNNYNMLQP RYLCKACKRY WTHGGSQRNI PVGGASRKQN  300
KRSSASLSLP AAASSSSVIN KELQQQLLPA APMIEPAADF NVFPSFMSTG FEHHSNQLPF  360
SPAPGPLPLP TLLPPAPVLA PDAGTPSFLD MLRGGFLDYQ TNGFYAPATP STGMEAPPPL  420
PFGGAAQPGV SGGRQGGGAA PTGGHVDATA AGQGAAWPKP QGRTLSQPFL SPSRHIVAVR  480
ASFFSTPPPS PLSAPDPTPP RTATAQTSPS AVSLPSARHS LCSLSPTCVL YRTSAARCRA  540
HPSPPPNPSP GLCTTPPLAS LVVPYARGRG VHSALLVPVV SSLPRQSVNR IGCGIDGSGF  600
ERQLGTVVAA CSGRGVARLS LLACTPVHTR ALPALHPHSC ARLSSYQLVA SVEAGGCCFA  660
HVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	431	437	GGRQGGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22474	3	7