PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02445.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 226aa MW: 25466 Da PI: 10.8323 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.3e-23 | 47 | 130 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 f+kv tpsdv+k++rlv+pk+fae+h g + ++ l + d +g W+++++y+++s++yv+tkGW+++v++++L + Zmw_sc02445.1.g00050.1.am.mk 47 FEKVVTPSDVGKLNRLVVPKHFAERHlpllGAAARAGTVLCFHDARGhAAWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAA 127 99****************************878889999*****999799******************************* PP T-E CS B3 77 gDf 79 gD+ Zmw_sc02445.1.g00050.1.am.mk 128 GDT 130 **7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-29 | 43 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.27E-23 | 45 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.36E-23 | 45 | 130 | No hit | No description |
Pfam | PF02362 | 1.3E-20 | 47 | 130 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.082 | 47 | 149 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-15 | 47 | 144 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MALTLAQESW KSSELGGGAG GLAAEGASSD QQLLQSHTGG GVRERLFEKV VTPSDVGKLN 60 RLVVPKHFAE RHLPLLGAAA RAGTVLCFHD ARGHAAWRFR YSYWGSSQSY VMTKGWSRYV 120 RDKRLAAGDT DARRGRRLRL FGVDLELRAE PLTRIGVQDI MIIDYVIIIE KREKQQGRRQ 180 RTVEDWKADD DQRWRARETR TSNTLQGGKK NGDSVKFLVR VLLLSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-35 | 43 | 129 | 4 | 89 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-35 | 43 | 129 | 4 | 89 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9LS06 | 4e-36 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | A0A3L6RX05 | 2e-44 | A0A3L6RX05_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Db02478.1.p | 1e-48 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |