PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02444.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 313aa MW: 32038.4 Da PI: 9.4829

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02444.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	80.4	4.9e-25	181	228	2	49
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktie 49 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+ Zmw_sc02444.1.g00050.1.am.mk 181 TVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETID 228 5789*******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-19	187	228	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	17.431	187	241	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
LAALRSLSLL PAAPPRPPRR LXXXPPPSCV PGTCSYHRLP PHRVTPPPEA KGAAFPFRSV 60 SSVKGKALWP SLAATRPSRG RTMDHGGGGG APSSSNSAGA SAGGGGTSGS RGGEPQQHPH 120 HAFYYTGPAA PAGSNSGVPP PPPSQQQASP FAGALAITPV PAGDQAQPSA DKKAVVAAAG 180 TVAKRPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIDGT TVQAPLQFMS 240 RAAAYPTAGG GNDTNLGMFA AVNPYNRGAN EDQQHEAEQQ RQRGGGDGGA AEDEEDGDDS 300 GEENHGGDNN SSQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52