PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc02437.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 208aa MW: 23140.6 Da PI: 6.6366 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.4 | 8.2e-10 | 19 | 60 | 11 | 52 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++NR +A rs +RK +i eLe+kv++L++e ++L +l Zmw_sc02437.1.g00100.1.am.mkhc 19 ASNRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 60 79*********************************9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-8 | 13 | 73 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.27E-9 | 19 | 64 | No hit | No description |
Pfam | PF00170 | 8.6E-8 | 19 | 61 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.22E-18 | 20 | 63 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-9 | 20 | 67 | No hit | No description |
PROSITE profile | PS50217 | 9.025 | 21 | 74 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MGADDDWEKG GGLKVTSSAS NRQSAARSKE RKARYITELE RKVQTLQTEA TTLSAQLTLF 60 QRDTTGLSTE NAELKIRLQA MEQQAQLRDA LNDALKQELE RLKLATGEVT NSDDTYNMRF 120 QHVPYNSSFF PFSQQNTAQH QGSVQLPPAF HPPHNVPNHH MISHPNTLQD IMQQDSIGRF 180 QGLDIGKGPP IVKSESSSIS ASESSSNF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984459.1 | 1e-106 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 4e-98 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A0A9ITV0 | 1e-106 | A0A0A9ITV0_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A1E5USX9 | 1e-106 | A0A1E5USX9_9POAL; Transcription factor RF2b | ||||
STRING | Pavir.Ib01574.1.p | 1e-107 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Publications ? help Back to Top | |||
---|---|---|---|
|