PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02436.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 254aa MW: 26417.3 Da PI: 7.9391 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64 | 1.7e-20 | 127 | 161 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++ Zmw_sc02436.1.g00120.1.am.mk 127 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 161 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.1E-19 | 121 | 173 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.246 | 121 | 157 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-14 | 123 | 161 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-17 | 125 | 161 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.62E-14 | 126 | 158 | No hit | No description |
Pfam | PF00320 | 3.3E-18 | 127 | 161 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 127 | 152 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MLDRYPNQSI SMVASTTFSL FFPPLPKVGQ WPDEDDHSSI TTSPSSPSSS STGSVDCTLS 60 LGTPSSRRAS AAAEPMTKHV ALPPPAHPSY VAWDDVVGGH QSSDYCRKPA GGAAKAGAHD 120 AFADRRCANC GTSSTPLWRN GPRGPKSLCN ACGIRFKKEE RRAAATAAME TGAGASAGCG 180 YSAQRAQYEY AAAVARASPC EGSFPCGGGV DADANASANT NAPFLPWRLN VVAPAPAPAF 240 AAVWPDRTSL FQYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963570.1 | 1e-58 | GATA transcription factor 15 | ||||
Swissprot | Q6L5E5 | 4e-44 | GAT15_ORYSJ; GATA transcription factor 15 | ||||
TrEMBL | A0A3L6R8D0 | 1e-59 | A0A3L6R8D0_PANMI; GATA transcription factor 19-like | ||||
STRING | Pavir.Ca00998.1.p | 1e-57 | (Panicum virgatum) | ||||
STRING | Si022366m | 3e-57 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Publications ? help Back to Top | |||
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