PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02434.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 406aa MW: 44239.2 Da PI: 9.9583

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02434.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.3	9.6e-25	97	146	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWt eLH++Fv av++LG ++kAtPk il+lm+v gLt++hvk HLQ Zmw_sc02434.1.g00020.1.am.mk 97 PRLRWTAELHHSFVGAVDSLGWPDKATPKLILQLMDVRGLTIAHVKNHLQ 146 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-23	93	146	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-11	95	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-18	97	147	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MQQCCAGCRC RCRAQGRLWG MNMTRAARAT KNKPSQPRRR AVLCSQSQQC SWLATQAEVE 60 SKEGEVDQGL PAERAEGAMG GGRNGAVTRR YNRSKVPRLR WTAELHHSFV GAVDSLGWPD 120 KATPKLILQL MDVRGLTIAH VKNHLQVGAE AAATHGSMQQ RNSAMGAPGT QHGSDDCMQA 180 MSMGRRRRMN QGLGLQRDAS TLQALGFWVR GSELFKVHQI SRPVANHIIS VVGQLPSKEI 240 SFESRGFLFR HEQAVKRSQS LSTLGPEAVE ATTSWPSESS VVLSPPSSTS FGGRSGASGC 300 FFARQRVNLE FSLVRQRKQY SKEGVAVETL PQTTSCTCMK SDTQADCPLG SNCMNEREQL 360 QRAGCEVLRQ VVGDEARPAS CAVRIGNSSG WLVASCQSPV HTPLIT

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MQQCCAGCRC RCRAQGRLWG MNMTRAARAT KNKPSQPRRR AVLCSQSQQC SWLATQAEVE  60
SKEGEVDQGL PAERAEGAMG GGRNGAVTRR YNRSKVPRLR WTAELHHSFV GAVDSLGWPD  120
KATPKLILQL MDVRGLTIAH VKNHLQVGAE AAATHGSMQQ RNSAMGAPGT QHGSDDCMQA  180
MSMGRRRRMN QGLGLQRDAS TLQALGFWVR GSELFKVHQI SRPVANHIIS VVGQLPSKEI  240
SFESRGFLFR HEQAVKRSQS LSTLGPEAVE ATTSWPSESS VVLSPPSSTS FGGRSGASGC  300
FFARQRVNLE FSLVRQRKQY SKEGVAVETL PQTTSCTCMK SDTQADCPLG SNCMNEREQL  360
QRAGCEVLRQ VVGDEARPAS CAVRIGNSSG WLVASCQSPV HTPLIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-13	98	146	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	98	146	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	98	146	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	98	146	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799208.1	3e-63	uncharacterized protein LOC112879085
TrEMBL	A0A368PPP9	3e-61	A0A368PPP9_SETIT; Uncharacterized protein
STRING	Pavir.Ab02674.1.p	2e-60	(Panicum virgatum)
STRING	Si019625m	1e-60	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83