PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02419.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 311aa MW: 34192.4 Da PI: 6.1714

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02419.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.7	2.7e-17	16	60	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kri+n+ rqv +skRr+g++ KA ELS+LC+a v v++f+ +gk Zmw_sc02419.1.g00090.1.sm.mk 16 KRINNEDARQVCLSKRRQGLFNKACELSILCGAMVGVVVFAISGK 60 79**************************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.7E-22	8	81	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.651	8	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.8E-26	8	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-15	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-19	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-15	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-15	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MVKNKTSMGR KKVKIKRINN EDARQVCLSK RRQGLFNKAC ELSILCGAMV GVVVFAISGK 60 PFSIGHPSID AVVNRFLDLN TPTAPAASNG ASQGSSGVTD VVRTLGEQYA KLQGLVEEEM 120 KRKQQLKEAT DKEMGGRFMR WLNAKIYELG QDELQEFYME LQAMKGVVFG NQELAPEAMQ 180 IPGSHAQAPM DIASASQHYQ FGESISHQYQ FGESSSQHFQ FGKSSSHWYQ FGELSSQQKQ 240 SGESGSQPQA PMGMASSLEH QFGEQNTIPM PLRGTSSMVE FFYGFEVDGP LLSDIDGFDG 300 SESSPSNQNF G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801350.1	2e-63	agamous-like MADS-box protein AGL61
TrEMBL	A0A2S3GWX3	5e-62	A0A2S3GWX3_9POAL; Uncharacterized protein
STRING	Si032189m	9e-60	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22260	3	3