PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02400.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 34166.1 Da PI: 4.4124 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 135 | 186 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++vAeIrdp+ +g r++lg+++ + +Aa+a+++a+ +++g+ Zmw_sc02400.1.g00160.1.sm.mk 135 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDVPIDAARAYDRAAFRMRGA 186 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 134 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.156 | 135 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.77E-18 | 135 | 194 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-21 | 135 | 194 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-13 | 135 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-35 | 135 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 175 | 195 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDFTGDADYF FDLDFIREHL LGSDNGVPMT SWVVSDDSGF PVLHPPAAEP ALQHVPFLPQ 60 QQQQQPEWYM DMAHDYTSAA PAAAAAGEEA CGAQEPVQPV MLMFESDPLS PAISYASPAA 120 TEAAAAPVPI EDFRKYRGVR QRPWGKYVAE IRDPKRRGSR VWLGTYDVPI DAARAYDRAA 180 FRMRGAKAIL NFPNEVGTRG ADLLAASAPA PAKKRRTRQE DPDVEVIAVV SKAAEIVEVP 240 SWTSTPVSSA SSPSSTSTFQ IAEIVASTVT SAASMTASDG AEWAFPETPS SWSWEQSWEE 300 LLRGLPPLSP HPEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 134 | 198 | 4 | 68 | ATERF1 |
3gcc_A | 2e-25 | 134 | 198 | 4 | 68 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446883.1 | 3e-79 | ethylene-responsive transcription factor 6 | ||||
TrEMBL | A0A3B6CB95 | 3e-78 | A0A3B6CB95_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MLS7 | 3e-78 | A0A446MLS7_TRITD; Uncharacterized protein | ||||
STRING | Sb06g024360.1 | 1e-78 | (Sorghum bicolor) | ||||
STRING | Traes_2AL_E5A9615E2.3 | 1e-78 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |