PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02388.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33115.2 Da PI: 10.2038 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 29 | 74 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 WT+ E +++ +a + l + +W+++a+ ++ gRt +++s+++++ Zmw_sc02388.1.g00110.1.am.mk 29 VWTAKENKQFERALAALDLRrpDWEKVAQAIP-GRTVDEVVSHFRSL 74 6*****************99************.***********975 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.3e-14 | 146 | 190 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Zmw_sc02388.1.g00110.1.am.mk 146 PWTEEEHRLFLLGLKKYGKGDWRNISRNFVHTRTPTQVASHAQKY 190 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.636 | 25 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 7.9E-5 | 26 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-7 | 29 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.28E-7 | 30 | 74 | No hit | No description |
SuperFamily | SSF46689 | 9.33E-9 | 30 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 0.001 | 30 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.53 | 139 | 195 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.43E-18 | 140 | 195 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-17 | 142 | 193 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-13 | 143 | 193 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 143 | 189 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-12 | 146 | 190 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.59E-11 | 146 | 191 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MMREAYMEVL PPMDHYTSRN NWFLGAPRVW TAKENKQFER ALAALDLRRP DWEKVAQAIP 60 GRTVDEVVSH FRSLEVDVRQ IESGVMPFPG YGGGRGGAAN SFTLQWDGSS GHVAGDFRHG 120 GYRFAGGCGK RHPGRTPEQE RKKGVPWTEE EHRLFLLGLK KYGKGDWRNI SRNFVHTRTP 180 TQVASHAQKY FIRLNSGGKD KRRSSIHDIT TVNLNDDQPP SPTQSSLITK QSNASAPTAA 240 VSQFSLKGDT KQHGSANLLF NSPSRTVGGM PAYGMGLQDQ GLQCAPLHDQ LVANASVLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-15 | 25 | 91 | 6 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817822.1 | 1e-175 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-79 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A5HJS5 | 1e-176 | A5HJS5_9POAL; MYB_Al protein | ||||
STRING | Si002426m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Publications ? help Back to Top | |||
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