PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02387.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 295aa MW: 31100 Da PI: 7.574

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02387.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	86	153	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C..................TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as...............kapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr ++P + +++ ++Ka+ L +++ ++k+L Zmw_sc02387.1.g00070.1.am.mk 86 KNHSEAERRRRERINAHLATLRGMVPCtDKlagyitkpaacarlpWRRAGDMDKAALLAEVITHVKKL 153 58*************************77799999999999999877888899999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.325	83	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-8	86	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-12	87	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-12	87	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-6	89	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00108	197	263	No hit	No description
Gene3D	G3DSA:3.30.70.260	6.9E-4	197	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSSFADHRLG GGNLNGDMSS VPLSDSELIY AGFGGGHGHD DLSQQLVAST SPVLSDGNAQ 60 DLDAETKETV TTKKGDRGEK AATALKNHSE AERRRRERIN AHLATLRGMV PCTDKLAGYI 120 TKPAACARLP WRRAGDMDKA ALLAEVITHV KKLKTSAAQL SSECPAVPAD ADEVTVELAQ 180 DSSPSSSSHA GVLIKATMSC EDGSDLFAEV KKALRPLRLR VVGSEVTTLG GRVRFTFLVS 240 PCAGAGDVVS VVDSVHQALQ AVIDKASSAL EFAPRASLLN KRRRVSTFES SSSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	96	ERRRRE
2	280	284	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457128.1	1e-91	transcription factor bHLH30
TrEMBL	A0A1B6Q0Z4	3e-90	A0A1B6Q0Z4_SORBI; Uncharacterized protein
STRING	Sb03g001730.1	5e-91	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11011	29	38