PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02377.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 252aa MW: 27267.8 Da PI: 6.2404

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02377.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.8e-11	76	123	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL +++ + + Kl+Ka iL A + + +L Zmw_sc02377.1.g00080.1.am.mkhc 76 SKACREKMRRDRLNDRFLELCSVINPG---KEAKLDKANILSDAARMLAHL 123 6789********************9...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-14	65	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.839	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.68E-8	75	128	No hit	No description
Pfam	PF00010	1.7E-8	76	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-12	77	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-7	78	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MMHDGGGAGD PVEDLLIIGD GDGDDGDLTI FCHGVPALAG DAGLGIEDDS GDAYGLEQTN 60 LGKRGRNEPS SSGPKSKACR EKMRRDRLND RFLELCSVIN PGKEAKLDKA NILSDAARML 120 AHLRGEAQKL KESNEKLRET IKDLKAEKNE LRDEKVSLKA EKERLEQQVK GMSAAPTGFV 180 PHLPHPTAFH PATHPTAFHP ATFAPFATQH QAPANKSASI PTAAFPGIAM WQWLPPTVMD 240 TTQDPKLWPP NA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810276.1	1e-125	transcription factor ILR3-like
TrEMBL	A0A1E5VID6	1e-126	A0A1E5VID6_9POAL; Transcription factor ILR3
STRING	Si018232m	1e-122	(Setaria italica)
STRING	Sb04g001200.1	1e-122	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8173	36	46