PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02372.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 495aa    MW: 54097.2 Da    PI: 6.9616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02372.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.98.9e-97364873374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   + L++  e v++g + +a+ +L+ + +las d+  +++Rlaa+f+ ALa++l++ v++l++al +s++++ +   + aa++
  Zmw_sc02372.1.g00100.1.am.mk  36 QELTSDNEGVAAGAFDNANFYLELITQLASLDApLTLHRLAAVFADALARKLLNLVPGLSRALMTSTADSAEAHLVPAARQ 116
                                   66777778899**********************89*****************************99999999999999999 PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161
                                    +++  P+lk+++l++N+aI ea+ege+ vH++D++    +++QW+aL++ +  R+eg+p+lRiT+v+s    ske l ++
  Zmw_sc02372.1.g00100.1.am.mk 117 HLFDKLPFLKLAYLATNRAIFEAMEGERFVHVVDLSgpTANPVQWIALFHLFCGRREGAPHLRITAVHS----SKEFLANM 193
                                   9**********************************955689****************************....9******* PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll........................ 214
                                   ++ L+k Ae++++pf+f++ v+++l++l++++L     v++gEala+++v qlhrll                        
  Zmw_sc02372.1.g00100.1.am.mk 194 ARILTKEAEAFDIPFQFSA-VESSLDELDIDALrqvlGVRSGEALAISVVAQLHRLLaaddaskrhggsssltplqfiars 273
                                   *******************.7999****9999855557888**************************************** PP

                          GRAS 215 ........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                                                                           + +++ + +  +++++vk lsPk++vv+e+ea+hn++ F e
  Zmw_sc02372.1.g00100.1.am.mk 274 sprsfgellerelntrlqlspdsssvlvslspqspgsglaAAQHQRSAKLGKFMSAVKALSPKIMVVTEREANHNAAAFQE 354
                                   ***************************************9555555556888***************************** PP

                          GRAS 256 rflealeyysalfdsleak............lpres...eerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                   rf ea++yy++lfd+le                  +    er+  E  +lg+ei+ vva egaer+erhe+l++W +r++ 
  Zmw_sc02372.1.g00100.1.am.mk 355 RFDEAVNYYASLFDCLEHAsaaaaqqrhhhhH---DavaAERARAESLVLGEEIRGVVAREGAERKERHERLAQWARRMDC 432
                                   ****************6665777777665332...145699**************************************** PP

                          GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   aG++ v+ls+ ++ +a+ ll  +++ gy v ++   + l+++W+++pL+s+SaWr
  Zmw_sc02372.1.g00100.1.am.mk 433 AGMERVELSYIVTREARKLLLSCGWGGYDVTQDarGDGLFFCWHRKPLYSISAWR 487
                                   ******************************9764478999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.198465IPR005202Transcription factor GRAS
PfamPF035143.1E-9436487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MLSEDMASST ATSSPASSLY TPSPHGYGCG YGSWVQELTS DNEGVAAGAF DNANFYLELI  60
TQLASLDAPL TLHRLAAVFA DALARKLLNL VPGLSRALMT STADSAEAHL VPAARQHLFD  120
KLPFLKLAYL ATNRAIFEAM EGERFVHVVD LSGPTANPVQ WIALFHLFCG RREGAPHLRI  180
TAVHSSKEFL ANMARILTKE AEAFDIPFQF SAVESSLDEL DIDALRQVLG VRSGEALAIS  240
VVAQLHRLLA ADDASKRHGG SSSLTPLQFI ARSSPRSFGE LLERELNTRL QLSPDSSSVL  300
VSLSPQSPGS GLAAAQHQRS AKLGKFMSAV KALSPKIMVV TEREANHNAA AFQERFDEAV  360
NYYASLFDCL EHASAAAAQQ RHHHHHDAVA AERARAESLV LGEEIRGVVA REGAERKERH  420
ERLAQWARRM DCAGMERVEL SYIVTREARK LLLSCGWGGY DVTQDARGDG LFFCWHRKPL  480
YSISAWRPAA SRLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-194323928217Protein SCARECROW
5b3h_A3e-194323927216Protein SCARECROW
5b3h_D3e-194323927216Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLK3Y6U20.0K3Y6U2_SETIT; Uncharacterized protein
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176