PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02368.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 74aa    MW: 7983.3 Da    PI: 11.9344
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02368.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.91.4e-082645120
                          GATA  1 CsnCgttkTplWRrgpdgnk 20
                                  C+ C++t Tp+WR gp g++
  Zmw_sc02368.1.g00080.1.sm.mk 26 CVECRATATPMWRGGPTGPR 45
                                  ******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.7E-62543IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.6582674IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MDSLQHKAIG IGVAAAAAPE ERRPFCVECR ATATPMWRGG PTGPRVSKRS VFRFSPHPVD  60
RLILRSVSAA VVGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W0923e-11A0A1E5W092_9POAL; Uncharacterized protein
STRINGPavir.J31164.1.p6e-12(Panicum virgatum)