PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02356.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37215.5 Da PI: 6.0048 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.3 | 1.5e-49 | 32 | 162 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 pGfrFhPt+eelv++yL++kv+gk+l++ e+ike+diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t Zmw_sc02356.1.g00160.1.am.mkhc 32 LPGFRFHPTNEELVTFYLQRKVDGKRLSI-EIIKEFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTG 109 69***************************.89***************445555789*********************** PP NAM 80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wkatg d++++s+ ++ +glkk+Lvfy+g+a kg+kt+W+mhe+rl Zmw_sc02356.1.g00160.1.am.mkhc 110 SGFWKATGVDRPIHSAvagrASACIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 162 **************9987766667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-53 | 31 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.517 | 31 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 33 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGFSKMKSDH GRQGEEEVVL VGDEDEDEDL VLPGFRFHPT NEELVTFYLQ RKVDGKRLSI 60 EIIKEFDIYK HDPWDLPKAS TISMDKEWYF FCLRGRKYRN SIRPNRVTGS GFWKATGVDR 120 PIHSAVAGRA SACIGLKKSL VFYRGSAGKG TKTEWMMHEF RLPPRPETAG SSPSTHEAEV 180 WTICRIFRRS LAYKKQPQSM STGNAATVSV PAQPADSSSN TGSLESDTGD DEYMNGLSPL 240 APPNNTNVRN AYDSYQFHGQ WNNGVVPMPP AWSCAETQPS PAMSSAFYHG PHGAHSSSLT 300 TSSPDDECYK GGCSWEDIGR MVMELADDPS VFYD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 33 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 33 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 33 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 33 | 195 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3ulx_A | 1e-45 | 23 | 195 | 6 | 174 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-45 | 33 | 195 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 33 | 195 | 19 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803594.1 | 1e-145 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 1e-78 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2S3GVN7 | 1e-143 | A0A2S3GVN7_9POAL; Uncharacterized protein | ||||
STRING | Si030477m | 1e-139 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |