PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02355.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 454aa    MW: 49662.1 Da    PI: 9.8675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02355.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-12801443199
                                   .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                   +++ t  + ++ g++W+v +   + +++ +l++GW eF  a+g+ +g fvv++++g  ++ l+vk f++
  Zmw_sc02355.1.g00040.1.sm.mk  80 AREATALVVSPFGKVWRVGV--GRDGEGAFLGRGWAEFLAAHGIGVGWFVVLRHEG--GGALTVKSFDT 144
                                   4567889999**********..99999**************************765..67789998886 PP
2B340.74.4e-131802611095
                                   HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                            B3  10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                   +  +  +++p kf++++        +     +l ++ g+ W++ l  +k ++++++++GW++F  ++g+ egD+v+++++g
  Zmw_sc02355.1.g00040.1.sm.mk 180 S--TEKMIIPAKFLKHYvteeY-L-NIFCISILVSPLGKFWRIVL--EKDQSGVFFADGWSQFLTSHGISEGDIVLLRYEG 254
                                   3..3458*******88877531.2.2333557889**********..****9****************************9 PP

                                   SSEE..EEE CS
                            B3  87 rsefelvvk 95 
                                   ++ f  ++k
  Zmw_sc02355.1.g00040.1.sm.mk 255 NMVF--RFK 261
                                   9999..444 PP
3B336.49.4e-123884423285
                                   --SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                            B3  32 esktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                   es t+tl++  +g rsW v    +   g+y l++GWk+F ++n+Lk+gD+++F ++
  Zmw_sc02355.1.g00040.1.sm.mk 388 ESSTITLKTsINGaRSWPVCG-LTAANGSYHLGSGWKKFYEENKLKVGDICTFNVV 442
                                   45588888844447*****98.5777778************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.04138145IPR003340B3 DNA binding domain
PfamPF023628.8E-1081144IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-1183146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1283147IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-787143No hitNo description
PROSITE profilePS508639.44692145IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-16167266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-17169271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.815169266IPR003340B3 DNA binding domain
CDDcd100173.24E-12170263No hitNo description
SMARTSM010197.1E-10172266IPR003340B3 DNA binding domain
PfamPF023621.5E-10180260IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-13336453IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.023339452IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14339453IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-11340443IPR003340B3 DNA binding domain
CDDcd100172.55E-8352439No hitNo description
PROSITE profilePS5086310.673388454IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MASSGDPVAP ARIKQLKVLL PRSVHKMVST IAIAVEHGCQ CNITGTKLIS LPGFKRISEE  60
LAGCFDVDGA ASAGGGEDGA REATALVVSP FGKVWRVGVG RDGEGAFLGR GWAEFLAAHG  120
IGVGWFVVLR HEGGGALTVK SFDTSFCIKD FGAPAAVMAS RGRKQASCKP QFIRLIRKDS  180
TEKMIIPAKF LKHYVTEEYL NIFCISILVS PLGKFWRIVL EKDQSGVFFA DGWSQFLTSH  240
GISEGDIVLL RYEGNMVFRF KTFGLNGGQK DLKNQNTGVQ QRTDTAKLSE SPSPTRKRKS  300
SDESSSSEEN SRLKSCMKSL NKTSAQKQPD YQIGPPSWIT KEITTYMLEK ILSLPVKFCD  360
SIGFQKSCIT TLKVATNSTR SWQIGLTESS TITLKTSING ARSWPVCGLT AANGSYHLGS  420
GWKKFYEENK LKVGDICTFN VVKTLLWQVD IARQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299TRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.11e-170putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5W9E31e-168A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
TrEMBLK3YCY51e-169K3YCY5_SETIT; Uncharacterized protein
STRINGSi012086m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187