PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02318.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 394aa MW: 42805.7 Da PI: 8.0905 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.4e-25 | 89 | 132 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Zmw_sc02318.1.g00110.1.am.mkhc 89 DPEPGRCRRTDGKKWRCSQEAYPDSKYCEKHMHRGKNRSRKPVE 132 79***************************************998 PP | |||||||
2 | QLQ | 57.6 | 3.9e-20 | 18 | 52 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++ Zmw_sc02318.1.g00110.1.am.mkhc 18 PFTATQWQELEHQALIYKCLASGKPIPSYLMPPLS 52 9******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.7E-11 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.433 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-13 | 18 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.658 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MMMMTNRAGG GAGTGRYPFT ATQWQELEHQ ALIYKCLASG KPIPSYLMPP LSRILDTALA 60 TSPSLAFPPQ PSLGWGCYGM GFGRKADEDP EPGRCRRTDG KKWRCSQEAY PDSKYCEKHM 120 HRGKNRSRKP VEMSLATPTP SANAASAASA TTAVSSPAPS YHRQAAAAAH NATPYNALYC 180 GSPFAASTRP AAAGAYHAAS QVSPFQLHLD TTPPHPPGSY YALDQRDYAY GHTAKQVGEH 240 TFFTDGGASE RNRHAAGQWQ FTQLGMEPKP TTPSLFPDGG YGNGAASAYA VDMTKEDNEE 300 ERRHQQQHCF VLGTDLRLER PSNPDVPEAQ KPLRPFFDEW PHEKNSKGSW MGLGGETQLS 360 MGIPMAANDL PVTSHYRNGA PTSHVSVSYT PTNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701613.1 | 0.0 | growth-regulating factor 1 isoform X2 | ||||
Swissprot | Q6AWY8 | 1e-159 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A2T7FCW6 | 0.0 | A0A2T7FCW6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03212.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |