PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02318.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 204aa MW: 22124.3 Da PI: 10.4568 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 87 | 134 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I + Rt ++k++w+++ Zmw_sc02318.1.g00080.1.sm.mkhc 87 AWTLCEVMKLVDGVALYGAGKWSEIRKLAFssySYRTSVDLKDKWRNL 134 7***************************999**99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.635 | 80 | 139 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-12 | 82 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.71E-15 | 82 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-7 | 84 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.71E-17 | 86 | 136 | No hit | No description |
Pfam | PF00249 | 5.4E-6 | 87 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGYDSSKLEA AAIDTKKLHA GLEDNIHSGK CEEASTTVGV MLGKDGKVGN HTRKVNAVKG 60 GHAEAVENKG VRKPKKNQAF TRKHHRAWTL CEVMKLVDGV ALYGAGKWSE IRKLAFSSYS 120 YRTSVDLKDK WRNLIRASKT QLHAIEDGGC PRKTNPSIIP IPPSILLRVK ELNELQSQGS 180 GFAGPLQFSG SNGKVVQGKG SGFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314012.1 | 7e-71 | uncharacterized protein LOC110434400 isoform X2 | ||||
TrEMBL | A0A1D6HLX1 | 7e-77 | A0A1D6HLX1_MAIZE; TRF-like 6 | ||||
STRING | Pavir.J06110.1.p | 6e-70 | (Panicum virgatum) | ||||
STRING | GRMZM2G049194_P02 | 1e-68 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |