PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02315.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 300aa MW: 32442.6 Da PI: 10.1017

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02315.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.5	9.5e-31	35	85	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ Zmw_sc02315.1.g00150.1.sm.mk 35 KPRLRWTAELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 85 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.5	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-29	32	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-14	34	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-21	35	85	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-8	37	85	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-23	98	143	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MFPSNSKKHS TASSNDRPMC VQGDSGGLVL TTDPKPRLRW TAELHDRFVD AVAQLGGPDK 60 ATPKTIMRVM GVKGLTLYHL KSHLQARKAA KRIRRSVDVN EALRIQMEVQ RRLHGELEVQ 120 KHLQMRVEAQ GKYMQSILEK AYQAIGSSEF ATWPSGYKSL GNQAAALDIG GSSSMGFSSL 180 QDLHFYGGSS SSYMDQHQPI MDHTFLTLGE SGAGTAAAGS SASKKGPAAR SSNHCSSTSN 240 SSMMWAGGEE QAKNAAASGQ QLQMGSSSTN VMDKRALSRP LTKLEERDVG LRSPFEAQPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	35	91	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700824.1	1e-125	myb family transcription factor APL
TrEMBL	K3XY57	1e-124	K3XY57_SETIT; Uncharacterized protein
STRING	Si006865m	1e-125	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90