PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02299.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 328aa MW: 35237.5 Da PI: 9.181

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02299.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	182	236	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k Zmw_sc02299.1.g00130.1.sm.mkhc 182 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTK 236 788899***********************************************98 PP
2	HD-ZIP_I/II	125.6	2.3e-40	182	271	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 +kk+rlsk+q+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+k++E+d+e Lkr++++l+een+r Zmw_sc02299.1.g00130.1.sm.mkhc 182 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTKLKKTEVDCELLKRCCESLTEENRR 260 69*************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreel 91 L++ev+eLr +l Zmw_sc02299.1.g00130.1.sm.mkhc 261 LQREVAELR-AL 271 ******9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.1E-24	17	148	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	2.4E-19	166	232	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-18	169	239	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	178	238	IPR001356	Homeobox domain
SMART	SM00389	5.4E-17	180	242	IPR001356	Homeobox domain
Pfam	PF00046	7.5E-17	182	236	IPR001356	Homeobox domain
CDD	cd00086	1.09E-17	182	239	No hit	No description
PROSITE pattern	PS00027	0	213	236	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-20	238	281	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.6E-9	238	272	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MMVNTSRGGE QYGGRHDHSL GLSLSLGIAT AAAPVEPTPP EQHQQKRAPI SPHFASQQPQ 60 QCWNGFSNGF FFSPSSGTDR SLFERKQQPP QPAAAACHGH EMPFLRGIDV NRAPGEEVSR 120 RGSCSEDEEP GASSPNSTLS SLSGKRGAAA TTSGGGEGDL TPRAAGGGSD DEDSGAGGGG 180 SRKKLRLSKD QAAVLEESFK EHNTLNPKQK AALAKQLNLK PRQVEVWFQN RRARTKLKKT 240 EVDCELLKRC CESLTEENRR LQREVAELRA LKLIAAPHPY ARIPPPPTTL TMCPSCERVA 300 DAARTAPAGP WGPVPVRPVF VDGPARRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	186	SRKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:10934011, ECO:0000269\|PubMed:9076993}.
UniProt	Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:9076993}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269\|PubMed:10732669}.
UniProt	INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269\|PubMed:10934011}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795353.1	1e-146	homeobox-leucine zipper protein HOX1-like
Swissprot	Q40691	1e-83	HOX1_ORYSI; Homeobox-leucine zipper protein HOX1
Swissprot	Q7XC54	1e-83	HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1
TrEMBL	A0A2S3IP41	1e-145	A0A2S3IP41_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SDQ6	1e-145	A0A3L6SDQ6_PANMI; Homeobox-leucine zipper protein HOX1 isoform X2
STRING	Pavir.Ia02217.1.p	1e-152	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89

Publications ? help Back to Top
Scarpella E,Boot KJ,Rueb S,Meijer AH The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition. Plant Physiol., 2002. 130(3): p. 1349-60 [PMID:12428000] Scarpella E,Rueb S,Meijer AH The RADICLELESS1 gene is required for vascular pattern formation in rice. Development, 2003. 130(4): p. 645-58 [PMID:12505996] Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Scarpella E,Simons EJ,Meijer AH Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis. Plant Cell Physiol., 2005. 46(8): p. 1400-10 [PMID:15964905] Meijer AH,Ouwerkerk PB,Hoge JH Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast. Yeast, 1998. 14(15): p. 1407-15 [PMID:9848232]