PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02288.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 538aa MW: 55942.8 Da PI: 6.8441 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.9 | 9.2e-35 | 193 | 288 | 1 | 83 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............sss 68 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l + + Zmw_sc02288.1.g00100.1.sm.mk 193 ATGRKDRHSKVCTSRGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDKLEVLpawqptnnaaagaALP 273 589**************************************************************7766655544444222 PP TCP 69 saseceaesssssas 83 ++s++ ++s ++s++ Zmw_sc02288.1.g00100.1.sm.mk 274 PSSSTHPDSAENSDD 288 222332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.0E-31 | 194 | 270 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.126 | 196 | 254 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MRIAAVAASA AKVVAANQAG DLDPRHHHRV AHGGDGAGGG GGGGGGEADE QQQQHNHRLL 60 QFHQEEQDQE PPSAPVFQLQ HLQATALSRQ RASSAEYALL ASMGDAGQSH SHSHLHHGGF 120 QPQLLSFGGV GQQHHHHLHQ FTAQAPAGAS HSRSRAAGGG GGGEAVPASQ SSSRVRSAGG 180 EIVAVQGGHI VRATGRKDRH SKVCTSRGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV 240 DWLIKNAKEA IDKLEVLPAW QPTNNAAAGA ALPPSSSTHP DSAENSDDQA QAITVAHAGF 300 DFPTRAEGGG AAGAGGGTAF LPSSLDSDSI ADTIKSFFPV GGGTAGGEAS SSTAVARHSS 360 AMRFQSYTPD LLSRTGSHSQ DLRLSLPDPP MFQHQQQEHD HGGNGSTQQA LFPGAGSYSF 420 GVWAEQAQSQ RTLPWSVPDP GGGSGYLFNV SQQAAALGGQ SQFLFQRGPL QSSTEPSDRG 480 WPESVEADNP MSAIGFAPGI GFSGFRVPAR IQGEEEHNGS GNGDKPPPPP AVSSASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 201 | 254 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 201 | 254 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310872.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_021310873.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | A2WM14 | 1e-166 | PCF5_ORYSI; Transcription factor PCF5 | ||||
TrEMBL | A0A1D6MFZ2 | 0.0 | A0A1D6MFZ2_MAIZE; Transcription factor TCP4 | ||||
STRING | AC205574.3_FGP006 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |