PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02286.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 602aa MW: 65605.5 Da PI: 9.5722 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.5 | 2.6e-49 | 240 | 365 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgy Zmw_sc02286.1.g00100.1.am.mk 240 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGY 319 79***************************.89***************8778899*************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl Zmw_sc02286.1.g00100.1.am.mk 320 WKATGADRMIRAENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 365 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.354 | 239 | 386 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-55 | 239 | 386 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-24 | 241 | 365 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MSPTCLPFRD QTVRLMLGHE ARARSEAVCL ASRVTMGRVN KEHCRSMHTF TLQKESQDQK 60 RHRSSLGRSR TRTQKAEAEI DTPIHHPWAV MDAQAATASS CPLAEPSLSP YLTRSAVAVR 120 PPPLLQRRGR AAGPLPSPRE LLIIPPPSIR SPPARRSCAR ACVAWRHASL IASCVRSIDR 180 SRWCLEEHGE EGESTAAVGA MSSGRLENGH GAAAPAVEGG GGGGRGGEGG GDSHEDDLVM 240 PGFRFHPTEE ELIEFYLRRK VEGKRFNVEL ITFLDLYRYD PWELPALAAI GEKEWFFYVP 300 RDRKYRNGDR PNRVTASGYW KATGADRMIR AENNRPIGLK KTLVFYSGKA PKGVRSSWIM 360 NEYRLPPDDT DRYNKTEISL CRVYKRSGID DGHGSRPSSA RSTPSSGATA PRDTNKQAAS 420 SSSTPTPTPT PPATPSKLHL LHGECTSPLA IADHARGHKA PSAPRQQKPS SAYLSATSAS 480 ADGDHQHEGT AATPYEHPRN TNPFASTYSL LSLVNAAAMG TSSFAAINEL NTLVDHGSPS 540 TAYFNHHQQA GGHSHFLSLP TAPPSSQPAL PVSLQAAISD KIWEWNTIPD AAGRDYSSAR 600 FK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-52 | 241 | 386 | 22 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 230 | GGRGGEGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970843.1 | 1e-169 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A1E5WH59 | 1e-171 | A0A1E5WH59_9POAL; NAC domain-containing protein 35 | ||||
STRING | Si001651m | 1e-168 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |